Pongo pygmaeus (Bornean orangutan): 129038250
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Entry
129038250 CDS
T10128
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg03013
Nucleocytoplasmic transport
ppyg03015
mRNA surveillance pathway
ppyg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129038250 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
129038250 (DDX39B)
03015 mRNA surveillance pathway
129038250 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyg03019
]
129038250 (DDX39B)
03041 Spliceosome [BR:
ppyg03041
]
129038250 (DDX39B)
Enzymes [BR:
ppyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129038250 (DDX39B)
Messenger RNA biogenesis [BR:
ppyg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129038250 (DDX39B)
Spliceosome [BR:
ppyg03041
]
Complex C
Other components
EJC/TREX
129038250 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129038250 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
129038250
NCBI-ProteinID:
XP_054346939
LinkDB
All DBs
Position
5:complement(31853862..31866133)
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AA seq
466 aa
AA seq
DB search
MVSSAPLCSFCSLLPMGSSHIGGLSINERRRSASFGLVMAENDVDNELLDYEDDEVETAA
GGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG
MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN
VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML
EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGL
QQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMP
QEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG
TKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcctcggcgccattgtgttcgttttgctcccttcttccaatgggttcttctcat
attggaggcctcagcatcaatgagaggcggcgctcggcgtcctttggtcttgttatggca
gagaacgatgtggacaatgagctcttggactatgaagatgatgaggtggagacagcagct
gggggagatggggctgaggcccctgccaagaaggatgtcaagggctcctatgtctccatc
cacagctctggctttcgtgacttcctgctcaagccagagttgctccgggccattgtcgac
tgtggctttgagcatccgtcagaagtccagcatgagtgcatccctcaggccattctggga
atggatgtcctgtgccaggccaagtcgggcatgggaaagacagcagtgtttgtgttggcc
acactgcaacagctggagccagttactgggcaggtgtctgtgctggtgatgtgtcacact
cgggagttggcttttcagatcagcaaggaatatgagcgcttctctaaatacatgcccaat
gtcaaggttgctgttttttttggtggtctgtctatcaagaaggatgaagaggtgctgaag
aagaactgcccgcatatcgtcgtggggactccaggccgtatcctagccctggctcgaaat
aagagcctcaacctcaaacacattaaacactttattttggatgaatgtgataagatgctt
gaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccacgagaag
caggtcatgatgttcagtgctaccttgagcaaagagatccgtccagtctgccgcaagttc
atgcaagatccaatggagatcttcgtggatgatgagacgaagttgacgctgcatgggttg
cagcagtactacgtgaaactgaaggacaacgagaagaaccggaaactctttgaccttctg
gatgtccttgagttcaaccaggtggtgatctttgtgaagtctgtgcagcggtgcattgcc
ttggcccagctactagtggagcagaacttcccagccattgccatccaccgtgggatgccc
caggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaattcttgtg
gctaccaacctatttggccggggcatggacatcgagcgggtgaacattgcttttaattat
gacatgcctgaggattcggacacctacctgcatcgggtggccagagcaggccggtttggc
accaagggcttggctatcacatttgtatccgatgagaatgatgccaagatcctcaatgat
gtgcaggatcgctttgaggtcaatattagtgagctgcctgatgagatagacatctcctcc
tacattgaacagacacggtag
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