Pongo pygmaeus (Bornean orangutan): 129038951
Help
Entry
129038951 CDS
T10128
Symbol
VARS1
Name
(RefSeq) valine--tRNA ligase isoform X1
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
129038951 (VARS1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
ppyg01007
]
129038951 (VARS1)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppyg03016
]
129038951 (VARS1)
Enzymes [BR:
ppyg01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
129038951 (VARS1)
Amino acid related enzymes [BR:
ppyg01007
]
Aminoacyl-tRNA synthetase
Class I (U)
129038951 (VARS1)
Transfer RNA biogenesis [BR:
ppyg03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
129038951 (VARS1)
Prokaryotic type
129038951 (VARS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
GST_C
tRNA-synt_1g
tRNA-synt_1_2
GST_C_2
Arc1p_N_like
Jag_N
Motif
Other DBs
NCBI-GeneID:
129038951
NCBI-ProteinID:
XP_054348471
LinkDB
All DBs
Position
5:complement(32102019..32120380)
Genome browser
AA seq
1265 aa
AA seq
DB search
MSILYVSPHPDAFPSLRALIAARYGEAGEGPGWGGAHPRICLQPPPTSRTPFPPPRLPAL
EQGPGGLWVWGATAVAQLLWPAGLGGPGGSRAAVLVQQWVSYADTELIPAACGATLPALG
LRSSAQDPQAVLGALGRALSPLEEWLRLHTYLAGEAPTLADLAAVTALLLPFRYVLDPPA
RRIWNNVTRWFVTCVRQPEFRAVLGEVVLYSGARPLSHQPGPEAPALPKTAAQLKKEAKK
REKLEKFQQKQKIQQQQPHPGEQKKPKPEKREKRDPGVITYDLPTPPGEKKDISGPMPDS
YSPRYVEAAWYTWWEQQGFFKPEYGRPNVSAANPRGVFMMCIPPPNVTGSLHLGHALTNA
IQDSLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKLWREQGLSRHQLGREAFLQEVWKW
KEEKGDRIYHQLKKLGSSLDWDRACFTMDPKLSAAVTEAFVRLHEEGVIYRSTRLVNWSC
TLNSAISDIEVDKKELTGRTLLSVPGYKEKVEFGVLVSFAYKVQGSDSDEEVVVATTRIE
TMLGDVAVAVHPKDTRYQHLKGKNVIHPFLSRSLPIVFDEFVDMDFGTGAVKITPAHDQN
DYEVGQRHGLEAISIMDSRGALINVPPPFLGLPRFEARKAVLVALKERGLFRGIEDNPMV
VPLCNRSKDVVEPLLRPQWYVRCGEMAQAASAAVTRGDLRILPEAHQRTWHAWMDNIREW
CISRQLWWGHRIPAYFVTVSDPAVPPGEDPDGRYWVSGRNEAEAQEKAAKEFGVSPDKIS
LQQDEDVLDTWFSSGLFPLSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLK
LTGRLPFREVYLHAIVRDAHGRKMSKSLGNVIDPLDVIYGISLQGLHDQLLNSNLDPSEV
EKAKEGQKADFPAGIPECGTDALRFGLCAYTSQGRDINLDVNRILGYRHFCNKLWNATKF
ALRGLGKGFVPSPTSQPGGHESLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWL
YELCDVYLECLKPVLNGVDQVAAECARQTLYTCLDIGLRLLSPFMPFVTEELFQRLPRRM
PQAPPSLCVTPYPEPSECSWKDPEAEAALELALSITRAVRSLRADYNLTRIRPDCFLEVA
DEATGALASAVSGYVQALASAGVVAVLALGAPAPQGCAVALASDRCSIHLQLQGLVDPAR
ELGKLQAKRVEAQRQAQRLRERRAASGYPVKVPLEVQEADEAKLQQTEAELRKVDEAIAL
FQKML
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcctctacgtctcccctcacccagatgccttccccagcctccgagccctcata
gccgctcgctatggggaggctggggagggtcccggatggggaggagcccacccccgcatc
tgtctccagccgcccccgactagcaggactccctttcccccaccccgcctgccggccctg
gagcaggggcctggtgggctctgggtgtggggggccacggctgtggcccagctgctgtgg
ccagcaggcctggggggcccagggggcagccgggcggctgtccttgtccaacagtgggtc
agttacgccgacacggagttaataccagctgcctgtggagcaacgctgccggccctggga
ctccgaagctcggcccaggacccccaggctgtgctgggggccctgggcagggccctgagc
cccttggaggagtggcttcggctgcacacctacttggccggggaggcccccactctggct
gacctggcggctgtcacagccttgctgctgcctttccgatatgtcctagacccacctgcc
cgccggatctggaataatgtgactcgctggtttgtcacatgtgtccggcagccagaattc
cgagccgtgctgggagaagtggttctatactcaggagccaggcctctctctcatcagcca
ggccccgaggctcctgccctcccaaagacagctgctcagctcaagaaagaggcaaagaaa
cgggagaagctagagaaattccaacagaagcagaagatccaacagcagcagccacatcca
ggggagcagaagaaaccaaaaccagagaagagggagaaacgggatcctggggtcattacc
tatgacctcccaaccccacccggggaaaagaaagatatcagtggccccatgcccgactcc
tacagccctcggtatgtggaggctgcctggtacacttggtgggagcagcagggcttcttc
aagccagagtatgggcgtcctaatgtgtcagcagcaaatccccgaggtgtcttcatgatg
tgcatcccaccccccaacgtgacaggctccctgcacctgggccacgcgctcaccaatgcc
atccaggactccctgactcgatggcaccgcatgcgtggggagaccaccctgtggaaccct
ggctgtgaccatgcaggtattgccacccaggtggtggtggagaagaagctatggcgtgag
caggggctgagccggcaccagctgggccgcgaggcttttctacaggaagtctggaagtgg
aaggaggagaaaggtgaccggatttaccaccagttgaagaagctcggcagctccttggac
tgggatcgagcctgtttcaccatggaccctaaactctcagcagctgtgacagaggccttt
gtccggcttcacgaggaaggcgtcatctatcgcagtacccgccttgttaactggtcctgc
accctcaactccgccatctctgacattgaggtggataagaaggagctgacaggtcgcacc
ctgctctccgtgcctggctacaaggagaaggtggagttcggggtcctcgtgtcctttgcc
tataaggtccaaggctcagacagcgacgaggaggtggtggtggcaacaactcggatcgag
acaatgctgggagatgtggctgtagctgtgcaccccaaagataccagataccagcacctg
aaagggaagaacgtgatccacccgttcctgtctcggagccttcccattgtcttcgatgaa
tttgtggacatggattttggcacaggtgctgtgaagatcacccccgcacatgaccaaaac
gactatgaagttgggcagcggcacgggctggaggccatcagcatcatggactcccggggg
gccctcatcaacgtgcctccgcctttcctgggcctgcccaggtttgaggccaggaaagcg
gtgctggtggcgctgaaggagcggggactgttccgtggcattgaggacaaccccatggtg
gtgccactttgcaaccggtcgaaggacgtggtagagcctctgctgcggccgcagtggtac
gttcgctgtggggagatggcccaggctgccagcgccgctgtgactcggggtgacctccgc
atcctgcctgaggcccatcagcgcacatggcatgcctggatggacaacatccgggagtgg
tgcatttccaggcagctgtggtggggccatcgcatcccagcctactttgtcactgtcagt
gacccagcggtgccccctggggaggaccctgatgggcggtactgggtgagcggacgcaat
gaggcggaggcccaggagaaggcagccaaggagttcggagtgtcccctgacaagatcagt
ctccagcaagatgaggatgtattggatacctggttctcctccggcctcttccctttatcc
attttgggctggcccaaccagtcagaagacttgagtgtgttctaccctgggacactgctg
gagaccggtcacgacatcctcttcttctgggtagcccggatggtcatgctgggcctgaag
ctcacgggcaggctgccctttagagaggtctacctccatgccatcgtgcgagatgctcac
ggccggaagatgagcaagtctctaggcaatgtcatcgatcccctggacgtcatctatgga
atctccctgcagggcctccacgaccagctgctgaacagcaacctggatcccagcgaggtg
gagaaggccaaagaagggcagaaagctgacttcccagcggggattcctgaatgtggcact
gatgctctccggtttggattatgtgcctacacgtcccagggtcgtgacatcaacctggat
gtgaaccggatactcggttaccgccacttctgcaacaagctctggaatgccaccaagttt
gcccttcgtggccttgggaagggttttgtgccctcacccacctcccagcccggaggccat
gagagcctggtggaccgctggatccgcagccgcctcacagaggctgtgaggctcagcaat
caaggcttccaggcctatgacttcccggccgtcaccactgcccagtacagcttctggctc
tatgagctctgtgacgtctacttggagtgcctgaaacctgtactgaatggggtggaccag
gtggcagccgagtgtgcccgccagaccctgtacacttgcctggacattggcctgcggctg
ctctcacccttcatgcccttcgtgacggaggagctgttccagaggctgccccggaggatg
ccgcaagctccccctagcctctgtgttaccccctacccggagccctcagagtgctcctgg
aaggaccctgaggcagaagccgcccttgagctggcgctaagcatcacgcgagccgtgcgc
tccctgcgggccgactacaacctcacccggatccggcctgactgtttcctggaagtggcg
gatgaggccacgggcgccctggcatcggcggtatcgggctacgtgcaggcactggccagc
gcaggtgtggtggctgttctggccctgggggctcccgccccccagggttgcgctgtagct
ctggcctctgatcgctgctccatccacctgcagctgcaggggctggtggaccctgcacgg
gagctgggcaagctgcaagcaaagcgagttgaggcccagcggcaggcccagcgtctgcgg
gaacgccgtgccgcctcgggctaccctgtcaaggtgccgctcgaagtccaggaggcagat
gaagccaagctccaacagacagaagcagagctgaggaaggtggacgaggccatcgcccta
ttccagaagatgctgtga
DBGET
integrated database retrieval system
