Pongo pygmaeus (Bornean orangutan): 129040230
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Entry
129040230 CDS
T10128
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated isoform X2
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg03018
RNA degradation
ppyg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129040230 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
129040230 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyg03019
]
129040230 (LSM8)
03041 Spliceosome [BR:
ppyg03041
]
129040230 (LSM8)
Messenger RNA biogenesis [BR:
ppyg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129040230 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
129040230 (LSM8)
Spliceosome [BR:
ppyg03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
129040230 (LSM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
dCache_1
TruB_C
Motif
Other DBs
NCBI-GeneID:
129040230
NCBI-ProteinID:
XP_054329888
LinkDB
All DBs
Position
6:116917452..116929297
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AA seq
107 aa
AA seq
DB search
MTSALENYINRILKLAASGLSGTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSS
QGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH
NT seq
324 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccgctttggagaactacatcaaccgtatcctcaagctggccgcctcgggctta
tcaggaactgttgccgttattacatcagatgggagaatgattgtgggaacactgaaaggt
tttgaccagaccattaatttgattttggatgaaagccatgaacgagtattcagctcttca
cagggggtagagcaagtggtactaggattatacattgtaagaggtgacaacgttgcagtc
attggagaaatcgatgaagaaaccgattctgcacttgatttggggaatattcgagcagaa
cctttaaattctgtagcacactga
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