Pongo pygmaeus (Bornean orangutan): 129043411
Help
Entry
129043411 CDS
T10128
Symbol
VPS13A
Name
(RefSeq) intermembrane lipid transfer protein VPS13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ppyg04131
]
129043411 (VPS13A)
Membrane trafficking [BR:
ppyg04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
129043411 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
129043411
NCBI-ProteinID:
XP_054356033
LinkDB
All DBs
Position
13:66823082..67072172
Genome browser
AA seq
3174 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVDLDTSQLSLGIWKGAVALKNLQIKENALSQLDVPFKVKVG
HIGNLKLTIPWKNLYTQPVEAVLEEIYLLIVPSSRIKYDPLKEEKQLMEAKQKELKRIEE
AKQKVVDQEQHLPEKQDTFAEKLVTQIIKNLQVKISSIHIRYEDDITNRDKPLSFGISLQ
NLSMQTTDQYWVPCLHDETEKLVRKLIRLDNLFAYWNVKSQMFYLSDYDNSLDDLKNGIV
NENIVPEGYDFVFRPISANAKLVMNRRSDFDFSAPKINLDVELHNIAIEFNKPQYFSIME
LLESVDMMAQNLPYRKFKPDVPLHHHAREWWAYAIHGVLEVNVCPRLWMWSWKHIRKHRQ
KVKQYKELYKKKLTSKKPPGELLVSLEELEKTLDVFNITIARQKAEVEVKKAGYKIYKEG
VKDPEDNKGWFSWLWSWSEQNTNEQQPDVQPEILEEMLTPEEKALLYEAIGYSETAVDPT
ILKTFEALKFFVHLKSMSIVLRENHQKPELVDIVIEEFSTLIVQRPGAQAIKFETKIDSF
HITGLPDNSERPRLLSSLDDAMSLFQITFEINPLDETVSQRCIIEAEPLEIIYDARTVNS
IVEFFRPPKEVHLAQLTAATLTKLEEFRIKTATGLLYIIETQKILDLKINLKASYIIVPQ
DGIFSPTSNLLLLDLGHLKVTSKSRSELPDVKQGEANLKEIMDIAYDSFDIQLTSVQLLY
SRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKIFGKLPLISLRISDK
KLQGIMELIESIPKPEPVTEVSASVKSFQIQTSTSLGTSQISQKIIPLLELPSVSEDDSE
EEFFDAPCSPLEEPLEFPTGVKSIRTRKLQKQDCSVNMTTFKIRFEVPKVLIEFYHLIGD
CELSVVEIHVLGLGTEIEIRTYDLKANAFLKEFCLKCPEYLDENKKPVYLVTTLDNTMED
LLTLEYVKAEKNVPDLKNTYNNVLQLIKVNFSSLDIHLHTEALLNTINYLHNILPQSEEK
SAPVSTTETEDKGDVIKKLALKRSTNEDIITLQILAELSCLQIFIQDQKRNISEIKIEGL
DSEMIMRPSETEINAKLRNIIVLDSDITAIYKKAVYITGKEVFSFKMVSYMDATAGSAYT
DINVVDIQVNLIVGCIEVVFVTKFLYSILAFIDNFQAAKQALAEATVQAAGMAATGVKEL
AQRSSRMALDINIKAPVVVIPQSPVSENVFVADFGLITMTNTFHMITESQSSPPPVIDLI
TIKLSEMRLYRSQFINDAYQEVLDLLLPLNLEVVVERNLCWEWYQEVPCFNVNAQLKPME
FILSQEDITTIFKTLHGNIWYEKDSSASPAVTKDQYSAASGVTTNASHHSGGTTVVTAAV
VEVHSRASGVKTTLNMSFKTDDLTMVLYSPGPKHASFTDVRDPSLKLAEFKLENIISTLK
MYTDSSTFSSFSLKNCILDDKRPHVKKATPRMIGLTVGFDKKDMMDIKYRKVRDSCVTDA
VFQEMYICASVEFLQTVANVFLEAYTTGTAVETSVQTWTAKEEVPTQESVKWEINVIIKN
PEIVFVADMTKNDAPALVITTQCEICYKGNLENSTMTAAIKDLQVRACPFLLVKRKGKIT
TVLQPCDLFYQTTQTGTDPQVIDMSVKSLTLKVSPVIINTMITITSALYTTKETIPEETA
SSTAHLWEKKDTKTLKMWFLEESNETEKIAPTTELVPKDEMIKMNIDSIFIVLEAGIGHR
TVPMLLAKSRFSGEGKNWSSLINLHCQLELEVHYYNEMFGVWEPLLEPLEIDQTEDFRPW
NLGIKMKKKAKEAIVESDPEEENYKVPEYKTVISFHSKDQLNITLSKCGLVMLNNLVKAF
TEAATGSSADFIKDLAPFIILNSLGLTISVSPSDSFSVLNIPMAKSYVLENGESLSMDYI
RTKDNDHFNAMTSLSSKLFFILLTPVNHSTADKIPLTKVGRRLYTVRHRESGVERSIVCQ
IDTVEGSKKVTIRSPVQIRNHFSVPLSVYEGNTLLGTASPENEFNIPLGSYRSFIFLKPE
DENYQMCEGIDFEEIIKNDGALLKKKCRSKNPSKESFLINIVPEKDNLTSLSVYSEDGWD
LPYIMHLWPPILLQNLLPYKIAYYIEGIENSVFTLSEGHSAQICTAQLDKAKLHLKLLDY
LNHDWKSEYHIKPNQQDISFVSFTCVTEMEKTDLDIAVHMTYNTGQTVVAFHSPYWMVNK
TGRMLQYKADGIHRKHPPNYKKPVLFSFQPNHFFNNNKVQLMVTDSELSNQFSIDTVGSH
GAVKCKGLKMDYQVGVTIDLSSFNITRIVTFTPFYMIKNKSKYHISVAEEGNDKWLSLDL
EQCIPFWPEYASSKLLIQVERSEDPPKRIYFNKQENCILLRLDNELGGIIAEVNLAEHST
VITFLDYHDGAATFLLINHTKNELVQYNQSSLSEIEDSLPPGKAVFYTWADPVGSRMLKW
RCRKSHGEVTQKDDMMMPIDLGKKTIYLVSFFEGLQRIILFTEDPKVFKVTYESEKAELA
EQEIAVALQDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKARWKPMSVKHTEKLERE
FKEYTESSPSEDKVIELDTNVPVRLTPTGHNMKILQPHVIALRRNYLPALKVEYNTSAHQ
SSFRIQIYRIQIQNQIHGAVFPFVFYPVKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISR
IKYFKVLIQEMDLRLDLGFIYALTDLMTEAEVTENTEVELFHKDIEAFKEEYKTASLVDQ
SQVSLYEYFHISPIKLHLSVSLSSGREEAKDSKQNGGLIPVHSLNLLLKSIGATLTDVQD
VVFKLAFFELNYQFHTTSDLQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGV
EAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAMTMDED
YQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKGGAAGFFKGVGK
GLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLRPPRFFNEDGVIRPYRLRDGTGNQ
MLQVMENGRFAKYKYFTHVMINKTDMLMITRRGVLFVTKGTFGQLTCEWQYSFDEFTKEP
FIVHGRRLRIEAKERVKSVFHAREFGKIINFKTPEDARWILTKLQEAREPSPSL
NT seq
9525 nt
NT seq
+upstream
nt +downstream
nt
atggttttcgagtcggtggtcgtggacgtgttgaaccggttcttgggggactatgtggtg
gacttggacacgtcccagctctctctgggcatctggaaaggagctgtggccctcaagaat
cttcaaattaaagaaaatgccctgagtcaactggatgtaccatttaaagttaaagttggt
cacataggtaatcttaaacttacaattccatggaaaaacctttatactcaacctgttgaa
gctgtattggaagaaatttatttacttatagtgccttcttctagaataaaatatgatcct
ttaaaagaagagaaacaactcatggaagcaaagcaaaaggaactgaaaagaatagaagaa
gcaaaacaaaaagtagttgatcaagaacaacatctgccggaaaaacaggacacttttgca
gaaaaattagttacacagatcataaaaaatcttcaggtgaaaatttccagtatccatatt
cgttatgaagatgatatcacaaatcgggacaaaccgctgtcatttggtatttcccttcaa
aatctgagcatgcagacaactgatcaatactgggttccatgtttacatgatgaaactgag
aaactagttcgtaagttaatccgattggataacctgtttgcctattggaatgtgaagtct
cagatgttttatcttagtgattatgataactccttggacgacttgaagaatggcattgtc
aatgaaaatattgttccagaaggttatgattttgtatttcgtcccatatctgctaatgcc
aaacttgtgatgaatcgccgatctgattttgacttttctgcccccaaaataaacttggat
gttgagttacataacatagcaattgaatttaataaaccacagtatttcagtattatggag
cttcttgaatcagttgatatgatggcacaaaatctgccatataggaagttcaaacctgac
gtgcctcttcaccaccacgccagagaatggtgggcttatgctatacatggtgttcttgaa
gtaaatgtttgccccaggttatggatgtggtcatggaagcatattagaaaacataggcaa
aaagtgaagcaatataaagaactgtataaaaaaaagttaacaagtaagaagccacctggt
gaacttctcgtgtctttggaggagttggaaaaaactttggatgtctttaatataactata
gctagacagaaggcagaagttgaggtaaagaaagctggatacaaaatttacaaagaagga
gtaaaagatccagaggataataaagggtggtttagctggctatggtcttggtcagaacaa
aatactaatgaacagcaaccagatgttcaacctgaaattcttgaagaaatgttgacacct
gaagaaaaagctttactctatgaagcaattggctatagcgaaacagcagttgatccaact
atactaaaaacatttgaagccttgaagttttttgtccacttgaaaagtatgtctattgtt
ctaagagaaaatcatcaaaaacctgagctggtagatattgtaatagaagaatttagcacc
ttaattgtgcaaagaccaggagcacaagcaataaaatttgaaactaaaatagattcattt
catattactggcttaccagataattcagaaagaccccgcctcctgtcttcattggatgat
gcaatgtcacttttccaaattacatttgagataaatccattagatgaaactgtttctcag
aggtgtatcatagaagctgaacctttagaaatcatatatgatgcaaggacagtgaatagt
atagtggaattcttcagacctccaaaagaggtacatctagcacagctcactgcagcaact
ttgacaaaactggaagaatttcgcattaagacagcaacaggtctactgtatattattgaa
acacagaaaattcttgatctcaaaattaatttgaaggcttcatatattattgtcccacaa
gatggaatttttagtcctacatcaaatctgcttcttttggaccttggtcatctaaaggtg
acgagtaaaagtcgttctgaattaccagatgtgaaacaaggtgaggccaatcttaaagag
ataatggatatagcttatgattcatttgatattcaacttacaagcgtacagctgctttac
agtagagttggtgataattggagagaagcacgaaaactcagtgtatctacccagcatatt
ttggtacccatgcacttcaatttggaactgtctaaggccatggttttcatggatgtaagg
atgcccaaattcaagatttttggaaagttacctcttatttctttacgaatctcagataaa
aaactacaagggattatggaattgattgaaagcattccaaaacctgaaccagtaactgaa
gtatctgcctctgtcaaatcattccagattcaaacatctacttctttgggaacatcacag
atttcacagaaaataattcctctcttggaacttccatctgtttctgaagatgattcagaa
gaggaattttttgatgcaccatgtagtcccttggaagaacctcttgagtttccaactgga
gttaaaagtattcgaaccagaaagttacaaaagcaggattgttcagtaaatatgactaca
tttaaaatacgatttgaagtaccaaaggttttgatcgagttttatcaccttattggagat
tgtgaactatctgtggtagaaattcatgttttaggattgggcacagaaattgagattaga
acatatgatttgaaagcaaatgcctttttgaaagagttctgcttaaaatgcccagaatac
ttggatgaaaacaagaaaccagtttatttggttacaaccctggataacacaatggaagac
ctgttaacactggaatatgtaaaggctgaaaagaatgtacccgacttgaaaaatacctat
aacaatgttttacaattgattaaggtaaatttttcctctttggatattcatttacacact
gaagcacttctgaatacaataaattatcttcataatatccttccacaatcagaggaaaaa
tcagccccagtgtccactacagagactgaagacaaaggagatgtcattaaaaaattagct
ttaaaacgatccacgaatgaagatatcattactttgcagattttagcagaattatcgtgt
ttacagatctttattcaagatcagaaacgtaacatttctgaaattaagattgaagggctt
gattctgagatgattatgaggccttcagaaactgaaataaacgcaaagctaaggaatata
attgttttagattctgatataacagctatatacaaaaaggctgtttatatcactggaaaa
gaagttttcagcttcaaaatggtttcttacatggatgcaactgctggttctgcatacaca
gatataaatgtggttgacattcaggttaatttaatagttggttgcattgaagtagttttt
gtcacaaaatttctatattctatattggcttttatagataattttcaggcagctaaacaa
gccttggctgaggcaactgttcaggcagctggaatggctgctactggtgtaaaagaactt
gcacaaaggagttccagaatggcactggatattaacatcaaagccccagttgtggtcatc
ccgcagtctccagtttctgaaaatgtttttgttgctgattttggactaattacaatgaca
aatacctttcatatgataacagagagccagagctctcccccacctgttattgatttgata
acaataaagctgagtgaaatgcgactatacagatctcaatttattaatgatgcataccag
gaagtactggatctactcctgccattaaatcttgaggtggtggttgaacgaaatttatgc
tgggagtggtaccaggaagttccttgttttaatgtaaatgctcagctgaaaccaatggag
ttcattcttagtcaagaagatataacaactatttttaaaacattgcatggcaatatatgg
tatgaaaaagatagtagtgcctcacctgctgtaacaaaagaccaatacagtgccgctagt
ggagttacgactaatgcttcacaccattcaggaggaacaactgtggtgacagctgctgtg
gtagaagtacattcacgtgcctcaggagttaagacaacattaaacatgagcttcaaaact
gatgatctcaccatggtgctgtatagtccaggtcctaaacacgcttcctttacagatgtt
cgtgatccttctctgaaacttgctgaatttaaattggagaatattataagtactttaaaa
atgtatacagacagctcaacattttcttccttctcattaaaaaactgtattttagatgat
aaaagacctcatgtcaagaaagcaactcctcgaatgataggactgacagttggttttgac
aaaaaagacatgatggatataaaatacaggaaagtcagagatagttgtgtgactgatgca
gtctttcaagaaatgtatatttgtgcaagcgtagaatttctgcagactgttgcaaatgtc
tttcttgaggcctacaccacaggcactgctgtagaaaccagtgtgcaaacatggactgct
aaggaagaagtacctacacaggaatcagtgaagtgggaaattaatgttattattaaaaat
cctgaaattgtgtttgtggctgacatgacaaaaaatgatgctcctgccttagtcattaca
acacaatgtgaaatttgctataaaggtaaccttgaaaatagtacaatgactgctgccatt
aaagatctccaagtgagagcctgcccgtttcttctagtcaagagaaaaggcaaaatcact
actgttttgcagccctgtgacttgttttatcaaactactcagacaggtacagatccacaa
gtgatcgatatgtcagtaaaatccctgacactaaaggtttcaccagttattataaatact
atgattaccataacttcagcactgtatacaactaaggaaaccatcccagaagaaacagct
tcttctactgcacatttatgggagaagaaggatacaaagactttaaaaatgtggtttctt
gaagaatcaaatgaaactgaaaaaatagctcccacaactgaattggtacccaaagacgag
atgataaaaatgaacattgattctatttttatagttcttgaggctggaattggtcataga
acagtacctatgcttctggcaaagtcacgtttttcaggggaaggcaaaaactggagttcc
ctaataaatctgcactgtcaacttgagctagaagtgcattattataatgaaatgttcggt
gtatgggagcctttgcttgaacccttagaaattgatcagactgaggattttagaccatgg
aatcttggtatcaagatgaaaaagaaagcaaaagaggccattgttgagtcagatcctgaa
gaagaaaactacaaagttccagaatataaaactgtcatcagtttccattcaaaagaccaa
ttaaacattacattatccaaatgtggtcttgtaatgttaaacaatttagtcaaggcattt
acagaagctgccactggatcttcagctgacttcataaaggatctagcaccatttattatt
ttaaattcccttggacttactatctctgtttcgccaagtgattcttttagtgtactcaac
attcctatggcaaaatcatatgtattggaaaatggagaaagtttaagtatggattatatc
cgaaccaaggacaatgatcatttcaatgcaatgaccagcctaagcagcaaactcttcttc
attcttcttacacctgttaaccattctactgctgataagattcctttaacaaaagtggga
cgacgtctgtacactgtaagacacagagagtctggcgttgaaagatctattgtttgtcaa
attgatacagtggaaggaagtaagaaggtcacaattcgctccccagtgcagataagaaat
catttttcagtcccactgtctgtttacgaagggaataccttattgggaactgcctcacct
gaaaatgaattcaacataccattaggatcttaccgatcattcatttttctgaagccagaa
gatgagaactatcaaatgtgtgaaggaattgactttgaagagattataaaaaatgatggt
gctcttctaaagaagaaatgtagatctaaaaacccttctaaggaatcatttctcattaat
attgttccagaaaaagataatttaacatctctatcagtgtattcagaagatggttgggat
ttaccatacataatgcatttgtggccacctatcctgctccaaaatcttcttccttacaaa
attgcttattatatagagggaattgaaaattcagtttttactctaagtgaaggacattca
gcccagatttgtactgcacagttggataaagccaagctacatttaaaattacttgactat
ctcaatcacgattggaaaagtgaataccacataaagcctaatcagcaagacattagtttt
gtcagttttacttgtgttacagaaatggaaaagactgatttagatattgctgtccatatg
acttataatactggtcagacagttgtggcatttcatagtccttattggatggtcaataaa
actggccgcatgttacagtacaaagcagacggaattcatcgaaagcatccacctaattat
aaaaagccagttctcttttcttttcagccaaatcacttttttaataacaataaggttcaa
cttatggtaaccgatagtgagttgtccaatcagttttcaattgatactgttggtagtcat
ggagctgttaaatgtaaaggcctgaaaatggactatcaagttggtgtcactatagacctg
agcagttttaacattactagaattgtgacatttacccctttttatatgattaaaaacaaa
agcaaataccatatatcagtggctgaagaaggaaatgataaatggctctctcttgatttg
gagcagtgtatccccttttggcctgagtatgcttctagtaaacttcttattcaagtcgaa
aggagtgaagatcctcccaaaaggatatattttaacaagcaagaaaattgtattctcttg
cgtctagataacgagcttggaggtattatagcagaagtgaatttggccgagcattctaca
gttattacatttttagattatcatgatggagcagctacattcctcttaataaatcacaca
aagaatgaacttgttcaatacaatcaaagttctctcagtgaaatagaagattccctccct
cctggtaaagcagtgttttatacatgggctgatccggtgggctctagaatgctgaagtgg
agatgtagaaaaagccatggtgaagtaacacagaaggatgatatgatgatgcctatagat
ttggggaaaaagacaatttatttagtttcattctttgaaggtttacaacgcattatttta
ttcactgaagatccaaaggtatttaaagtaacatatgaaagtgagaaagcagagttagca
gagcaagaaattgcagtggcattacaagatgttggaatttctcttgtcaacaattacaca
aagcaagaagtagcctatataggcattacaagttctgatgtggtttgggaaacaaagccc
aagaagaaggcaagatggaagccaatgagtgtaaagcacactgagaagttagagagagaa
tttaaggaatatactgaatcttctccttcagaagataaggttattgagttggacactaac
gttccggttcgcctaacacctactggtcataacatgaaaattctgcagccgcatgtaata
gctctacgaagaaattatcttccagcattaaaagtggaatataacacatctgcacatcaa
tcatcatttagaattcagatttacagaatacagatccaaaatcagatacatggtgctgta
tttccctttgtgttttatcctgttaaacctccaaagtcagtcaccatggattcagcacca
aagccctttacggatgtcagtattgtcatgagatctgcaggacattcccagatatcacgt
attaagtatttcaaagtattgattcaagaaatggatctcaggttagatcttgggtttatc
tatgctttaacagaccttatgacagaagctgaggtgactgaaaatacagaggttgagctt
tttcataaagatatagaagctttcaaagaagaatataaaacagcctcattagtagatcaa
tcacaagtcagcctctatgaatattttcatatatctcctatcaagttacatttaagtgtt
tcactgagttccggcagagaagaagctaaagattcaaaacaaaatggaggattgattcca
gttcattctttaaatcttctgctgaagagtattggtgctacactgacagatgtacaagat
gtagtttttaagcttgcattttttgaactcaactatcagttccatacaacatccgaccta
cagtctgaagtcataagacactattcaaaacaggccattaagcagatgtatgtactcatt
cttggacttgatgttttgggaaatccgtttggcttaattagagaattttctgaaggtgtg
gaagcatttttttatgaaccttaccagggagccatccagggtcctgaagagtttgtggag
ggaatggcactaggacttaaggcactagttggtggagctgttggtggattggctggtgct
gcctccaaaatcaccggtgctatggctaaaggggtagcagctatgaccatggatgaagac
taccaacagaagagaagagaagccatgaataagcaaccagctggttttagagaaggcatc
actcgtggaggaaaaggcttagtttctggatttgttagtggcataacaggaattgttaca
aaaccaatcaaaggagctcaaaaaggaggagcagctggtttctttaaaggtgttgggaaa
ggtttagtaggagcggtagcaaggccaactggaggcatcatagacatggctagcagtaca
tttcagggaataaaaagagctacagagacttctgaagtggagagtctgcgacctcctcgg
ttcttcaatgaagatggagttatcagaccgtacaggttgagggatgggactggaaatcaa
atgttacaggtcatggaaaatggaagatttgcaaaatacaaatattttacccatgtcatg
atcaataagacagatatgctaatgataaccagacgtggtgtattgtttgtaacaaaggga
acatttggacaactcacgtgtgagtggcagtatagttttgatgaatttaccaaagagcca
ttcattgttcatgggagaagattgcgcattgaagcaaaggaacgagtgaagtctgtattt
catgccagagagtttggaaaaataattaacttcaagaccccagaggatgccaggtggatc
ctcacaaagctacaagaagcaagagaaccttctccgagcctctga
DBGET
integrated database retrieval system
