Pongo pygmaeus (Bornean orangutan): 129044642
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Entry
129044642 CDS
T10128
Symbol
SMARCA2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ppyg Pongo pygmaeus (Bornean orangutan)
Pathway
ppyg03082
ATP-dependent chromatin remodeling
ppyg04714
Thermogenesis
ppyg05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
ppyg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
129044642 (SMARCA2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
129044642 (SMARCA2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
129044642 (SMARCA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppyg03021
]
129044642 (SMARCA2)
03036 Chromosome and associated proteins [BR:
ppyg03036
]
129044642 (SMARCA2)
Transcription machinery [BR:
ppyg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
129044642 (SMARCA2)
Chromosome and associated proteins [BR:
ppyg03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
129044642 (SMARCA2)
Chromatin remodeling factors
BAF complex
129044642 (SMARCA2)
PBAF complex
129044642 (SMARCA2)
GBAF(ncBAF) complex
129044642 (SMARCA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
129044642
NCBI-ProteinID:
XP_054358648
LinkDB
All DBs
Position
13:complement(55770834..55986827)
Genome browser
AA seq
1585 aa
AA seq
DB search
MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPTM
GSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGTLIPGDPQAMSQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQQQQQQQQQQQQPQQQPPQ
PQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPAPSGRPSPAPPAAAQPPAAAVPGP
SVPQPAPGQPSPILQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLP
GSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLRE
ARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHA
NTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVW
EHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKV
LFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPN
SEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLK
HYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTL
SNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRW
KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKS
CSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYV
IKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHI
EESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDY
FAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFD
SDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFD
QKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDA
RNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQW
LRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPAKEDVEKAKKRRGRPPAEKLSPNPPKLTK
QMNAIIDTVINYKDRCNVEKVPSNSQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRK
PVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQK
IAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRGKAKP
VVSDFDSDEEQDEREQSEGSGTDDE
NT seq
4758 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcccacagaccctggtgcgatgccccacccaggtccttcgccggggcctggg
ccttcccctgggccaattctcgggcctagtccaggaccaggaccatccccaggttccgtc
cacagcatgatggggccaagtcctggacctccgagtgtctcccatcctatgccaacgatg
gggtccacagacttcccacaggaaggcatgcatcaaatgcataagcccatcgatggtata
catgacaaggggattgtagaagacatccattgtggatccatgaagggcactggtatgcga
ccacctcacccaggcatgggccctccccagagtccaatggatcaacacagccaaggttat
atgtcaccacacccatctccattaggagccccagagcacgtctccagccctatgtctgga
ggaggcccaactccacctcagatgccaccaagccagccagggaccctcatcccaggtgat
ccgcaggccatgagccagcccaacagaggtccctcacctttcagtcctgtccagctgcat
cagcttcgagctcagattttagcttataaaatgctggcccggggccagcccctccccgaa
acgctgcagcttgcagtccaggggaaaaggacgttgcctggcatgcagcaacaacagcag
cagcaacagcagcagcagcagcagcagcagcaacagcagccgcagcagcagccaccacaa
ccacagacgcagcaacaacagcagccggcccttgttaactacaacagaccatctggcccg
gggccggagctgagcggcccgagcaccccgcagaagctgccggtgcccgcgcccagcggc
cggccctcgcccgcgccccccgcagccgcgcagccgcccgcggccgcagtgcccgggccc
tcagtgccgcagccggccccggggcagccctcgcccatccttcagctgcagcagaagcag
agccgcatcagccccatccagaaaccgcaaggcctggaccccgtggaaattctgcaagag
cgggaatacagacttcaggcccgcatagctcataggatacaagaactggaaaatctgcct
ggctctttgccaccagatttaagaaccaaagcaaccgtggaactaaaagcacttcggtta
ctcaatttccagcgtcagctgagacaggaggtggtggcctgcatgcgcagggacacgacc
ctggagacggctctcaactccaaagcatacaaacggagcaagcgccagactctgagagaa
gctcgcatgaccgagaagctggagaagcagcagaagattgagcaggagaggaaacgccgt
cagaaacaccaggaatacctgaacagtattttgcaacatgcaaaagattttaaggaatat
catcggtctgtggccggaaagatccagaagctctccaaagcagtggcaacttggcatgcc
aacactgaaagagagcagaagaaggagacagagcggattgaaaaggagagaatgcggcga
ctgatggctgaagatgaggagggttatagaaaactgatcgatcaaaagaaagacaggcgt
ttagcttaccttttgcagcagaccgatgagtatgtagccaatctgaccaatctggtttgg
gagcacaagcaagcccaagcagccaaagagaagaagaagagaaggaggaggaagaagaag
gctgaagagaatgcagagggtggggagtctgccctgggaccggatggagagcccatagat
gagagcagccagatgagtgacctccctgtcaaagtgactcacacagaaaccggcaaggtt
ctgttcggaccagaagcacccaaagcaagtcagctggacgcctggctggaaatgaatcct
ggttatgaagttgcccctagatctgacagtgaagagagtgattctgattatgaggaagag
gatgaggaagaagagtccagtaggcaggaaaccgaagagaaaatactcctggatccaaat
agtgaagaagtttctgagaaggatgctaagcagatcattgagacagctaagcaagacgtg
gatgatgaatacagcatgcagtacagtgccaggggctcccagtcctactacaccgtggct
catgccatctcggagagggtggagaaacagtctgccctcctcattaacgggaccctaaag
cattaccagctccagggcctggaatggatggtttccctgtataataacaatttgaatgga
atcttagccgatgaaatggggctaggaaagaccatacagaccattgcactcatcacttat
ctgatggagcacaaaagactcaatggtccctatctcatcattgttcccctttcgactcta
tctaactggacatatgaatttgacaaatgggctccttctgtggtgaaaatttcttacaag
ggtactcctgccatgcgtcgctcccttgtcccccagctacggagtggcaaattcaatgtc
ctcttgactacttatgagtatattataaaagacaagcacattcttgcaaagattcggtgg
aaatacatgatagtggacgaaggccaccgaatgaagaatcaccactgcaagctgactcag
gtcttgaacactcactatgtggcccccagaaggatcctcttgactgggaccccactgcag
aataagctccctgaactctgggccctcctcaacttcctccttccaacaatttttaagagc
tgcagcacatttgaacaatggttcaatgctccatttgccatgactggtgaaagggtggac
ttaaatgaagaagaaactatattgatcatcaggcgtctacataaggtgttaagaccattt
ttactaaggagactgaagaaagaagttgaatcccagcttccagaaaaagtggaatatgtg
atcaagtgtgacatgtcagctctgcagaagattctgtatcgccatatgcaagccaagggg
atccttctcacagatggttctgagaaagataagaaggggaaaggaggcgctaagactctt
atgaacactattatgcagttgagaaaaatctgcaaccacccatatatgtttcagcacatt
gaggaatcctttgctgaacacctaggctattcaaatggggtcatcaatggggctgaactg
tatcgggcctcaggaaagtttgagctacttgatcgtattctgccaaaattgagagcgact
aatcaccgagtgctgcttttctgccagatgacatctctcatgaccatcatggaggattat
tttgcttttcggaacttcctttacctacgccttgatggcaccaccaagtctgaagatcgt
gctgctttgctgaagaaattcaatgaacctggatcccagtatttcattttcttactgagc
acaagagctggtggcctgggcttaaatcttcaggcagctgatacagtggtcatctttgac
agcgactggaatcctcatcaggatctgcaggcccaagaccgagctcaccgcatcgggcag
cagaacgaggtccgggtgctgaggctctgtaccgtgaacagcgtggaggagaagatcctc
gcggccgcaaaatacaagctgaacgtggatcagaaagtgatccaggcaggcatgtttgac
caaaagtcttcaagccacgagcggagggcattcctgcaggccatcttggagcatgaagag
gaaaatgaggaagaagatgaagtaccggacgatgagactctgaaccaaatgattgctcga
cgagaagaagaatttgacctttttatgcggatggacatggaccggcggagggaagatgcc
cggaacccgaaacgcaagccccgcttaatggaggaagatgagctgccctcctggatcatt
aaggatgacgctgaagtagaaaggctcacctgtgaagaagaggaggagaaaatatttggg
agggggtctcgccagcgccgtgacgtggactacagtgacgccctcacggagaagcagtgg
ctaagggcgattgaagacggcaatttggaggaaatggaagaggaagtacggcttaagaag
cgaaaaagacgaagaaatgtggataaagatcctgcgaaagaagatgtggaaaaagctaag
aagagaagaggtcgccctcccgctgagaaactgtcaccaaatccccccaaactgacaaag
cagatgaatgctatcatcgatactgtgataaactacaaagataggtgtaacgtggagaag
gtgcccagtaattctcagttggaaatagaaggaaacagttcagggcgacagctcagtgaa
gtcttcattcagttaccttcaaggaaagaattaccagaatactatgaattaattaggaag
ccagtggatttcaaaaaaataaaggaaaggattcgtaatcataagtatcggagcctgggc
gacctggagaaggatgtcatgcttctctgtcacaacgctcagacgttcaacctggaggga
tcccagatctatgaagactccatcgtcttacagtcagtgtttaagagtgcccggcagaaa
attgccaaagaggaagagagtgaggatgaaagcaatgaagaggaggaagaggaagatgaa
gaagagtcagagtccgaggcaaaatcagtcaaggtgaaaattaagctcaataaaaaagat
gagaaaggccgggacaaaggaaaaggcaagaaaaggccaaatcgaggaaaagccaaacct
gtagtgagcgattttgacagcgatgaggagcaggatgaacgtgaacagtcagaaggaagt
gggacggatgatgagtga
DBGET
integrated database retrieval system
