Photinus pyralis (common eastern firefly): 116161307
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Entry
116161307 CDS
T07438
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ppyr
Photinus pyralis (common eastern firefly)
Pathway
ppyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116161307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyr03019
]
116161307
Enzymes [BR:
ppyr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
116161307
Messenger RNA biogenesis [BR:
ppyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116161307
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_Thc1
R3H
Peroxin-3
YpjP
Motif
Other DBs
NCBI-GeneID:
116161307
NCBI-ProteinID:
XP_031330481
LinkDB
All DBs
Position
Unknown
AA seq
579 aa
AA seq
DB search
MEVTRSNFLQLLPSIKEAIAKCDFIVIDCELTGLNTVNNINAFDTQKQYYEKVRRNSKDF
LIIQYGLCMFRYDVDKKVYKQQGYNFYIFQTGANKFVPDHRFLCQSSSLDFLSGSGFDFN
KLFKEGISYLNSNEEEKCRASLSDAQKVRANKLHNNSFTPEKCNQAINDEDKELVNNIFN
EIRDFIASDKEEHVLPKCNAYIRRLVYQQAEAKLANKASLETRALENRDHVLVVTRLKSK
EDREAMNRKVVEREEEQLRQSIGFASVIKAIVESGKLVVGHNMCLDLLHTIHQFLIPLPF
EYQEFKEIAHYSFPKILDTKYMSSTAPLRGLIDSTVVAHLLATVQKEPFKIPDIEVEENL
EGYTLDNTKQHEAGYDAYITGVSFLAMWNYLHTLNGQSESYPNFSLLDPYCNRLFLMRLQ
DCPYMNLAGTDVIPSREHIVYLSFPKTWKQNDIFQLFSPFGNVFIAWIDDQSAYIALQRR
DQISIVLSTLSQSETYTIMSYAQRQAHLAGDTGLGLLPKQRTRAASEINPSVKKRKMVSE
GGGITKEKVTLNLTPFVNKKTKIEKSAQKQTFDEPSDWE
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggaagttacacgatcaaactttcttcagttgctcccttcaataaaggaggcaatagcc
aaatgcgactttatagtaattgactgcgaattaaccggtttaaatacggtaaataatatc
aacgcgttcgacacccaaaaacagtactacgagaaagtacggcgaaactcgaaggacttc
ttaattattcagtacggcttatgcatgttcaggtatgacgtcgacaagaaagtctacaaa
cagcaagggtacaacttttacatctttcaaactggcgcaaataagttcgtgcccgatcat
cgatttttgtgtcagtcgtctagtttagatttcctatccggtagtggattcgattttaat
aagctcttcaaggaggggatctcgtacttgaactcgaacgaagaggagaaatgtcgcgcc
tcgttatcggacgcgcagaaagtacgcgccaataaactgcacaacaacagtttcaccccg
gaaaagtgcaaccaggcgataaacgacgaagataaggagctcgtcaataatattttcaac
gaaatacgcgattttatagcgagcgacaaagaagagcacgtccttccgaaatgtaacgcg
tacattaggcgattggtttatcaacaggcggaggcgaagctcgcgaataaagccagtttg
gagactagggcgttagaaaatagggatcacgtgcttgtagtaacccgattaaagtcgaag
gaggacagagaagcgatgaatcgaaaggtcgtcgagagggaagaggaacagctgcggcaa
agtatcgggtttgcctctgttataaaagcaattgtcgaatctgggaaattggtcgtcggt
cacaatatgtgcctggatcttctccacacaattcatcaatttttgattcctttgcccttc
gaatatcaggaatttaaggaaattgctcattattcgtttcctaaaatattggatacgaag
tacatgtctagtacagcgccactgaggggtttgatcgattcaacagtcgtggctcatttg
ctggccactgttcagaaggaaccctttaaaattcccgatatagaagttgaggaaaacctg
gagggatacactcttgacaacaccaagcaacacgaggcgggctacgacgcgtacataacc
ggcgttagttttctagcaatgtggaattacctacacaccttaaatggacaaagtgaaagt
tacccaaacttttcgctactagatccatactgtaataggttattcctgatgcggttgcag
gattgtccctatatgaatttagcgggaacggacgtgatccccagtagggaacatattgtg
tacctgtcatttccaaagacttggaagcagaatgacattttccaattgtttagcccgttt
ggtaacgtattcatcgcttggattgatgaccagtcggcctacattgctctgcaaagacgg
gatcagatttcaattgttttaagtacactttcacaaagcgaaacttacacgattatgtct
tacgcgcaacgtcaagcgcatcttgcgggtgataccggtctgggtctactaccgaaacag
aggacgagagcggcgagtgaaatcaatccgtctgtcaagaagaggaaaatggttagcgaa
ggggggggtattacaaaggagaaggtaaccctcaatttaaccccatttgtaaataagaaa
acaaaaattgaaaaatctgctcagaaacaaacttttgacgagcctagtgattgggaatga
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