Photinus pyralis (common eastern firefly): 116162808
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Entry
116162808 CDS
T07438
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
ppyr
Photinus pyralis (common eastern firefly)
Pathway
ppyr04512
ECM-receptor interaction
ppyr04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ppyr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116162808
04518 Integrin signaling
116162808
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ppyr00536
]
116162808
Glycosaminoglycan binding proteins [BR:
ppyr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116162808
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
NELL_VWC_C
TILa
Motif
Other DBs
NCBI-GeneID:
116162808
NCBI-ProteinID:
XP_031332383
LinkDB
All DBs
Position
Unknown
AA seq
1533 aa
AA seq
DB search
MGNVKIIWALFVAFMFLRTTAEARVRKAKLTPQTAGIQNPPGQGNYNDYEEYEDYNYEEY
DEKKGQPPDERPKPRPVPTTTQRYEQPPDEVPEPIPTVPVPVPVPTTTIKPTPSPDCQQD
GQVYRDGQKWKSSACTTCTCYVGQISCQTDPNCGKPPVTKPPTKPPVTTSYEASPTDSFP
GPIGDLGYPGVPGYPGDIGEPGYPGMPGAPGPPGPPGPSPDLSHYYAQMSQSQAGQDKGP
SYPESFHFMQAQVGPVGARGVPGPPGPIGPQGFQGARGDVGEQGPPGPSGMPGARGLPGL
PGKDGENGEDGEAGAIGAAGPIGPRGLPGMPGLPGVKGHRGFPGLDGAKGEQGQGGEKGS
AGPAGPIGPHGAIGNAGPRGERGREGPPGPPGLRGVDGIPGPPGQPGAIGKSGAPGFPGS
AGNKGDQGAYGPKGSQGLQGPRGEPGRPGQPGESGQPGPAGKDGYPGEKGIPGSAGLAGA
PGFPGARGAPGVAGSPGEVGPKGLPGMPGERGYKGEGGMKGEGGAAGARGAPGPSGAEGK
RGKRGMRGPTGPSGAAGERGASGARGLPGPDGAIGPKGPPGDRGGVGAQGAKGPQGDIGR
PGLPGMQGERGLAGKTGPPGKTGNAGERGPPGADGKAGEQGVQGIQGLPGPIGAPGEKGP
AGESGKDGEPGAHGAIGPRGDPGKDGAIGHPGPPGPSGHDGERGQPGSPGPRGFQGLPGA
PGNAGLQGKDGDVGMPGPPGPPGAAGNRGERGFPGERGGVGLPGPSGARGETGGQGSDGP
PGPQGPIGEKGHSGLPGLVGLPGLRGPTGPQGDKGERGSYGAPGPEGPAGRLGERGPPGP
VGPQGAHGESGERGEPGAQGVPGEHGAAGSPGERGSIGPPGAQGFPGPQGLVGLPGGKGE
RGAGGAKGSQGNPGHAGKPGDSGPPGLTGLTGPKGMRGEPGARGEGGLMGAPGRPGEPGA
AGHQGSPGPAGPQGLPGIKGSSGDVGRAGSPGAQGLPGPPGLDGAKGDTGHEGSPGLHGP
PGPSGAAGERGLPGLPGPPGPAGLRGLRGPAGETGPAGKAGNEGAPGMMGLMGPVGLPGA
HGEQGPEGPPGKAGPPGLAGRPGDKGPVGPAGQAGSIGPTGLPGPPGSAGSPGAAGERGP
RGETGPMGVEGPQGARGKSGAPGEAGSKGDRGDMGPMGMKGHRGLIGLQGMPGLPGVAGE
RGGIGSPGLPGKDGDTGPRGTPGRDGNPGAQGLSGLPGERGLSGENGRPGPPGPPGPPGL
PGPPGEGMGYDAAALAALLGQGPQSQKGPDPMDDEPIRIFGKEMTDEERRELVVKAYEQL
KSSFERFKKPNGQKSSPGKTCRDIAAAYPDSESGEYWVDPNDGDIRDSILVYCDMKKRAT
CLLPKPDRSSEISYKGHEQEVWLSEMENGMKLTYKADNNQITFLQLLSTQAQQTITYHCK
NSVAYYDEQKKTHRKGVKLLSWNDVELTPRGNQRLRYEVPVDECKSRQNTWARTVLTYTS
DKATRLPIADIAVRDIGQPDQAFWVEIGPVCFS
NT seq
4602 nt
NT seq
+upstream
nt +downstream
nt
atggggaatgtgaaaattatatgggctctcttcgtggcgttcatgtttttacgaacaact
gcggaagcgcgtgttcgaaaagcaaaactaactccacaaactgccggaatacaaaatcct
cctggacaaggaaattacaacgattatgaagaatatgaggattataattatgaagaatac
gacgaaaagaaaggacaaccacctgacgaacgaccaaagcctcgtcccgtgcctactacc
acacaacggtatgaacagcctcccgatgaagtaccagaacccatacctacagttccagta
cctgttcctgttccaactacaactataaaaccaaccccatcgccagattgtcaacaggac
gggcaagtttaccgtgacggacaaaaatggaaatcaagcgcttgtactacttgtacctgt
tatgtaggacagatttcttgccagacagatccaaattgtggaaaaccaccagttacaaag
cctcctacaaaaccaccagtgacaacatcatatgaagcttccccaactgattcgtttcct
ggcccaataggcgaccttggttatccaggtgtacctggttatcctggtgatatcggcgaa
ccaggttaccctggcatgcctggagcacctggcccacctggacctcccggtccgtcacca
gatctatctcactactatgcacagatgtcacaatctcaggctggacaagataaaggaccg
tcgtatcccgaatcattccattttatgcaggcgcaagtaggacctgtcggtgcccgtggc
gtaccagggccaccaggtcccattggtccccagggatttcaaggtgcgcggggtgacgtg
ggagaacaaggtcctcccggtccatcaggtatgccaggagctcgtggattgccaggatta
cccggaaaagatggagaaaatggagaagatggtgaagctggagctattggagcggcaggt
ccaattggtcctagaggcttaccgggaatgcctggtttgccaggtgtaaaaggccataga
ggtttccccgggttagatggcgcgaagggagagcaaggtcagggaggtgaaaaaggaagc
gcaggtcccgccggacctattggtccacatggcgctattggaaacgcaggacctcgcggt
gagcgtggtagggaaggtccaccaggtcctcctggtttaagaggagtcgatgggattcct
ggaccaccgggacaaccaggcgcaattggcaaatccggtgcacctggattccctggtagt
gctggaaacaagggtgatcaaggagcttacggtcccaaaggtagtcaaggattgcaagga
ccacggggtgaaccaggccgacctggccaacctggagaatcaggacaacctggtccagct
ggaaaagatggataccctggagaaaagggtattcccggatctgctgggttagctggagca
cctggtttccctggagcacggggtgcacccggtgtggctggtagtccaggagaagttggt
cccaaaggtcttcccggaatgcctggagaacgtggttataagggtgaaggtggtatgaaa
ggagaaggcggtgcagcaggagcaagaggtgctccaggaccgtctggtgccgaaggtaaa
cggggcaaacgaggaatgcgaggtccaacgggaccaagtggtgctgcaggtgaacggggc
gcttctggtgctagaggtttaccaggaccagatggagccatcggtcctaaaggaccgccc
ggtgaccgtggcggtgttggcgcacagggagcgaaaggtcctcaaggagatattggtaga
cctggattgcccggaatgcaaggggagagaggtttagcaggaaaaaccggacctcctggt
aaaacaggaaatgccggtgaacgtggtccgcctggtgctgatggcaaggccggtgagcaa
ggtgtacaaggaatacaaggattgccgggtccaataggtgctcccggagagaaaggacct
gcgggagagtcaggaaaagatggcgaacctggcgcacatggagcaataggaccgcgtggt
gatccaggaaaagacggtgctattggccacccgggacctccaggaccatctgggcacgat
ggtgaacgaggacaacccggttctcctggaccacgaggtttccaaggtttacctggtgct
cctggaaatgctggtttacaaggtaaggatggtgacgttggtatgcctggaccacctggt
cctccgggagccgctggaaacagaggcgaaagaggtttcccgggtgaaagaggaggagtt
ggattacccggaccatcgggcgcacgaggagaaacaggaggacaaggaagcgacggacca
cctggtccacaaggacctattggtgaaaaagggcatagcggtttacctggtttagttgga
cttcccggtttacggggacctactggccctcaaggtgataaaggtgaaagaggatcttac
ggcgcacccggtcccgaaggacctgctggaagattaggagaaagaggtccaccgggaccc
gtcggccctcaaggggctcatggggaatctggggagaggggcgaacctggcgcacagggt
gtaccaggtgaacatggtgctgcaggatctcccggtgaacgaggaagcataggacctcct
ggtgcacaaggattccctggaccacaaggtttggtcgggcttcccggcggtaaaggagag
cgaggggctggaggtgctaaaggttctcaaggaaacccaggtcacgccggcaaacctgga
gactctggaccacctggattaactggtttaacgggaccaaaaggaatgcgaggagagcct
ggtgctagaggagaaggtggtctaatgggcgccccaggtcggccaggagaacctggtgct
gcaggacatcaaggaagtcctggacctgcaggacctcaaggattacctggaataaaaggt
agtagtggtgatgttgggcgagcaggaagtccaggagcacaaggattgccggggccaccc
ggattagatggagctaaaggtgacactggacacgagggttctccaggtctccatggtcca
ccaggaccatcaggggctgcgggagaaagaggtttacctggtcttccgggaccaccagga
ccggctggacttcgtggacttcgaggacctgcgggcgaaacaggacctgctggaaaagca
ggaaatgaaggcgcacctggtatgatgggtttaatgggaccagtaggattgcctggcgca
catggagagcagggacctgaagggccacctggtaaagctggacctccaggattagctggt
agacccggtgacaaaggtcctgtaggaccggcaggtcaagcaggatctattggtcctact
ggattaccaggcccacctggctctgcaggaagtcccggagccgctggagagcgaggtcct
cggggcgaaactggaccaatgggtgtggagggtccccaaggagcaagaggcaaatctggt
gctcccggtgaagcaggatcgaagggagatcggggtgatatgggacctatggggatgaaa
ggtcacagaggtctaattggtttacaaggaatgccagggttacccggtgttgctggggaa
agaggaggtattggttctcctggattacccggaaaagatggtgataccggtccaagaggc
acccctggcagagatggaaaccccggtgcccaaggcttatcggggctgccgggagaaaga
ggtttatctggtgaaaatggtcgccccggtcctcctggtccaccaggacctcctggtctt
cctggacctcccggagaaggtatgggatacgatgcggctgcattagcggcattacttggg
caagggcctcaaagccaaaagggaccggatccaatggatgacgagccgattcgcattttc
ggaaaagaaatgacagacgaagagagaagggaattagttgttaaggcttatgaacaattg
aaatcctcatttgaacgtttcaagaagccaaacggccaaaaatcttctcccggaaaaaca
tgcagagacatagctgccgcatatcccgattccgaaagcggcgaatactgggtcgatccc
aacgacggtgatattcgagattctatactggtttattgcgacatgaaaaaacgcgcaact
tgtcttcttcccaaacctgacagatcctccgaaatttcatacaaaggacacgaacaagaa
gtatggttaagcgaaatggaaaacggtatgaagttaacatacaaagcggataacaatcaa
atcacattcttacaattattatctacacaagcccaacaaaccatcacgtatcactgcaag
aatagtgtagcatattacgatgagcagaaaaaaacgcatcgcaagggagtcaagcttttg
agctggaatgacgttgaactaacaccgcgaggaaatcaaagactacgatacgaagtacca
gtagatgaatgcaagtctcgacaaaacacttgggccagaacagtattaacgtacacttca
gataaagctactcgactaccaattgcagacattgcggttagagatatcggtcaacctgat
caagcattctgggttgaaattggaccggtatgctttagctaa
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integrated database retrieval system
