Photinus pyralis (common eastern firefly): 116168024
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Entry
116168024 CDS
T07438
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
ppyr
Photinus pyralis (common eastern firefly)
Pathway
ppyr03013
Nucleocytoplasmic transport
ppyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116168024
09122 Translation
03013 Nucleocytoplasmic transport
116168024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyr03019
]
116168024
03041 Spliceosome [BR:
ppyr03041
]
116168024
Messenger RNA biogenesis [BR:
ppyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
116168024
Spliceosome [BR:
ppyr03041
]
Complex C
Other components
EJC/TREX
116168024
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116168024
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
TPR_19
Motif
Other DBs
NCBI-GeneID:
116168024
NCBI-ProteinID:
XP_031339527
LinkDB
All DBs
Position
Unknown
AA seq
1518 aa
AA seq
DB search
MAGTLNPEIWKNWEKSGKSEFMKLFLQLCKDNTKSPMFDKSGKIQNITHNLNMLVINGVH
GTIKKEWVISALQELAALHSDNAAIICDVLNVADAETSVFENPDDPKERNSLGYIIRECE
KFLSDKLLKERLEIDTLQEVGVLKTRNFYTKFIKIKTKLYYKQRKFNLFREESEGFSKLV
TELNQDFKKSMACKTLLDIVQSLIGCFNLDPNRVLDVIFESFENKPMDTRLFIPLINSYM
NDHKVIAEVSGSKYLFLRNSSDSHVPKSLFVLTAHLLQHGLIKLNDIYPWLTPEDKVMQK
DWDSDMKSAREYMQSLQVVSLNPSKDDAIEEKDNSTDQYNNNQKLGLCEALLEIGDWENA
QLIINRLPEHFAMDYQPAALALCSLLHYIIEPVYRANYKLGNKLKGRVVPPHKNPLAPKP
VHTFLDLRKVAIPMLLTLGPSLRYDPLLLYKVIRLAKAAMSSYGIDTSSTQPPDGDTLYY
DILTILDTTILPSLSYLECNCCVAETVWNIIKLYPYHVRYCLYGQWKNETYALYPDLIRR
RADAEKSLKNTMKRVSKENLKHTGRSIGKLTHSSPGYLFDYILVQVQVYDNLIYPVVDSL
KYLTSLSYDVLGYCLVETLSNAEKKRVKHDSTSISHWLQSLSCFSGAIFKKYNIELTGLL
QYVANQLKAQKSLDLLILKEIVQKMAGVESAEELTMDQLNAMAGGELLKSEAGYFSQVRN
TKKSSIRLKDAMADQNLAVTLCLLMAQQKYCAVYRETQQSHLKLVGNLADQCQDTLVQFG
TFLGSTLSVDEYTNKLPSIQSMLLDYHIPYEVAFFLARPMLNHSINIKYDQLRKSDSNYK
KLSTQAKHQKYFDAVTEIMEPVFKSIVPLHPPKVWEDISPQFLTTFWSLTMFDLFVPDET
YQQVISKIKQQSLQIADTNTSKGKKDLERYMTLMEKVQDEKKKQHEHVDKVLYRLNQEKD
TWFLSRSVKAAKNETITRFLQLCLFPRCTFTPIDAVYCAKFVHTIHSLKTPNFSTLLCYD
RLFCDVTYSITSCTENEAIRYGRFLCAMLETVMRWQKSKENFDRECANYPGFVTKFRVSN
QCNDSMDHVGYENYRHVCHKWHFKLAKAMMICLDSKDFVQIRNALIILIKIIPHFPVLLK
LSQIIEKRVEKVKDEEKNQRQDLYTLAISYHGQLKQRIASGHMLKESEFHVTEKEKAAKS
HDAAKHDVNTSSKHNGDARDQADTSKESAKDVKEKPEIKRSRQSSEDTKPLPKVPTSDIN
NSKDKLAEKEKQPKESRIDKDLRKEEKRDDLERDKDRDRRRERKEEKLIGKEDRVYRDER
YIEMLSPKDDVRYSSERDRYYEDRGAHYLREVRDEREISFGNNGSNLRRSQEPPEPDREL
KRRKMEGSTSKSSKHEERKMQQQMEYFIEKSEKKERTSKAKDKREKISDEEKELRKERKI
GRKRDRSEEAVWERKRRDEEKVAKMMSHQNGEMLEATHTREKHHHPREKSPYMRERERSH
DRIELRDKHRRSTENKRR
NT seq
4557 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaacgttgaaccccgaaatatggaaaaattgggagaaaagcggtaaaagtgaa
ttcatgaaactttttcttcaattatgcaaagataatacaaaaagtccaatgtttgataaa
agtggaaagatccaaaacatcacgcataatctcaatatgttggtaatcaacggcgttcac
gggacaatcaaaaaggaatgggtcataagtgctttacaggaattggcagctttgcacagt
gataacgctgctataatatgcgacgttttaaacgtcgccgatgccgaaacgtccgtgttt
gagaatccagacgatcctaaagagcgtaacagtttgggttacattattcgagagtgcgag
aagtttttgtctgataaattacttaaagaacggctggaaattgacactttgcaagaagtc
ggagttttaaagacacggaatttttacaccaaatttataaaaatcaaaacgaaactttat
tataagcaacgtaaattcaatttgttccgagaggaaagcgagggattttcaaaactagtt
accgaactaaatcaagatttcaaaaaaagtatggcatgcaaaacattattagatatcgtc
cagtctttaataggttgcttcaatttggatccgaatcgtgtgctagatgtaatatttgaa
agttttgaaaacaaaccgatggacaccagattatttataccgttaattaactcgtacatg
aacgatcataaagttattgcggaagtgtccggttccaaatatttgtttcttagaaatagt
tcggattctcatgtacccaagtcactgtttgtattaacagcgcatcttttacaacatgga
ttaattaaacttaatgatatttacccgtggctcacaccagaggataaggtgatgcagaaa
gattgggacagtgatatgaaaagtgcaagggaatacatgcaatcgcttcaggtggtctcg
ctaaatccttccaaagatgatgcaatcgaagaaaaagataacagcaccgaccaatataac
aacaaccaaaagttgggtttatgcgaggcgttgttagaaatcggggattgggagaacgca
caactgattattaatcgattacccgaacattttgccatggattatcaaccggccgcctta
gctctgtgtagtttacttcactacattatcgagccggtgtatagagcgaattataaactg
ggaaataaactaaagggaagagttgttccaccacataaaaatccattggcgccgaaaccg
gtgcatacatttttagacctgcgaaaagtagccattcccatgttgcttacgttaggacca
tcgctacgttatgatccattgctactgtataaagtaataagactggcaaaagccgcaatg
agttcttatggtattgatacgtcgtccactcagcctcccgatggggacacattatattac
gacatccttacgatactcgacaccacaattttgccctccctttcttatttagagtgtaac
tgttgtgttgccgaaaccgtttggaatatcatcaaactgtatccatatcacgttcgttat
tgcttgtacggacagtggaagaacgaaacctacgctttgtatccagatctgattcgaagg
cgggcagatgcggagaagtcactaaaaaacacgatgaaacgtgtcagtaaagaaaatctt
aaacacaccggtagaagtattggaaagctaacgcatagctctccgggatatttatttgat
tacattcttgttcaagtgcaagtttacgataatttaatttatccggtagttgactcttta
aaatatctgactagcctatcgtacgacgttctgggttattgcttggttgaaactttatca
aatgccgagaaaaagagagttaagcacgacagcacctcgatctctcattggttgcagagt
ttatcctgttttagtggtgcaatctttaagaagtataatattgaacttaccggtttattg
cagtatgtggccaatcaattgaaagctcaaaagagtttggatcttttgattttgaaggaa
attgttcaaaaaatggcaggtgttgaatctgcagaggagttgacaatggaccagcttaat
gccatggctggtggtgaactattgaaatcagaggccgggtactttagtcaagtcagaaat
acgaaaaaatcctcaatccgtttaaaagatgccatggctgatcaaaacttggcagttact
ctttgcctattaatggctcaacagaaatattgtgcggtttatcgagaaacgcagcaaagt
cacttgaaactagttggaaatttggctgaccaatgccaagacaccctagttcagttcggt
acattcctaggatcgacattatctgtagatgaatacacaaataaattaccatcaatacaa
agtatgttattggactatcatatcccgtatgaagttgcattctttctggcaagaccaatg
ttaaaccattcaataaatatcaagtatgaccaattaaggaaatcagattcgaattacaaa
aaattatcgactcaagctaagcatcaaaagtatttcgacgctgtaacggaaataatggag
cctgtttttaagtcaatcgtcccacttcatccccccaaagtgtgggaagacatttcccca
caattcctcaccacattttggtcactgactatgtttgacttattcgtccccgacgagaca
tatcagcaggttatttcgaaaattaagcagcaatccttgcaaatcgccgacactaatacc
agcaagggaaagaaggatttggaacgatacatgactctcatggaaaaggttcaggacgag
aagaagaaacagcacgagcacgttgacaaagtattgtacagattaaatcaagaaaaggac
acgtggtttctgtcgagatcggtgaaggcggcgaaaaatgaaaccataactcgatttttg
caactctgtttgttcccgaggtgtacttttacgccgattgatgcagtgtattgtgccaaa
tttgtccatacaatacatagcttgaagacacccaacttttctactcttctgtgttatgat
aggttgttttgtgacgtgacctattctattacatcatgtacagaaaacgaagcaatccgt
tacggtcgctttctttgcgcgatgctcgagaccgttatgcgttggcagaaatcgaaggaa
aatttcgacagggaatgcgccaattatccaggatttgttacgaaatttcgcgttagtaac
caatgtaacgacagcatggatcacgtcggctacgagaactatcgacacgtctgtcataag
tggcactttaaattagccaaggccatgatgatatgcttggactcgaaagattttgtacaa
attcgcaatgcgctgattatacttatcaagatcattccccactttcctgttcttttgaaa
ttaagccagattatagagaagagggttgagaaagtgaaggatgaggagaagaaccaacgg
caggatttgtacacgttagctattagttatcacgggcagttaaagcagagaattgcttca
ggacatatgttgaaggaaagcgagtttcatgtgacagaaaaagaaaaggcggcaaaatcc
catgatgccgctaagcatgatgtaaatacttcatctaaacataatggggatgctcgagat
caagccgatacgtcgaaagaatctgcaaaagatgtgaaggaaaagccggaaatcaaaagg
agcaggcagtcatctgaagatactaagccgttgccaaaagtaccaacgtcagatataaat
aactccaaagataaattagccgagaaagaaaaacaacccaaagaaagtcgaatagacaag
gatcttagaaaagaggaaaagcgagacgacctagagcgtgataaagaccgtgaccgacga
cgagagcggaaagaggaaaaattaataggtaaagaagatagggtatacagggacgaacga
tatattgaaatgttaagtcccaaagacgatgtaagatattcgagcgaacgcgatcgatat
tatgaagatcgaggtgcccactatcttagagaagttcgtgacgaacgcgaaattagtttc
ggaaataatggttcaaatttgagacgcagtcaggaaccacccgaacccgatagagaacta
aaaagaagaaaaatggagggttctacttcgaagagttccaaacacgaagagcgtaagatg
caacagcaaatggagtatttcattgaaaaatcggaaaagaaagaacgaacctccaaggcc
aaagataaacgagaaaagattagcgacgaagagaaggaacttcgaaaggaacgaaaaatt
ggccgcaaaagggatcgttccgaagaagctgtatgggaacgaaaacgccgagacgaggaa
aaagttgccaaaatgatgtcgcatcaaaatggcgaaatgttggaagcaacacacacccgc
gaaaaacaccaccatcccagagagaaatcaccgtatatgcgagaaagagagagatctcac
gatagaatagaattaagagataaacatagacgttccacagaaaacaagagaagatga
DBGET
integrated database retrieval system
