Photinus pyralis (common eastern firefly): 116170126
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Entry
116170126 CDS
T07438
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ppyr
Photinus pyralis (common eastern firefly)
Pathway
ppyr03008
Ribosome biogenesis in eukaryotes
ppyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppyr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116170126
09123 Folding, sorting and degradation
03018 RNA degradation
116170126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyr03019
]
116170126
03009 Ribosome biogenesis [BR:
ppyr03009
]
116170126
03016 Transfer RNA biogenesis [BR:
ppyr03016
]
116170126
03036 Chromosome and associated proteins [BR:
ppyr03036
]
116170126
Messenger RNA biogenesis [BR:
ppyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
116170126
mRNA degradation factors
5'-3' decay
5' exonucleases
116170126
Ribosome biogenesis [BR:
ppyr03009
]
Eukaryotic type
Pre-60S particles
RNases
116170126
Transfer RNA biogenesis [BR:
ppyr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
116170126
Chromosome and associated proteins [BR:
ppyr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116170126
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
116170126
NCBI-ProteinID:
XP_031342174
LinkDB
All DBs
Position
Unknown
AA seq
1644 aa
AA seq
DB search
MGVPKFFRYISERYPCLSEIVKEYQIPEFDNLYLDMNGIIHMCSHPDDADPHFRISEEKI
FTDIFHYIEVLFRMIKPRKLFFMAVDGVAPRAKMNQQRGRRFRSAKEAQTSEAKALERGE
VLPTEARFDSNCITPGTVFMANLHEQLKYFIVNKISTDALWRNCKIILSGHETPGEGEHK
IMDYIRYMRAQPGYDPNTRHCLYGLDADLIMLGLCTHEPHFSLLREEVRFGKKSNKRKNI
PEQITFYLLHLSLMREYLELEFLPLKSSLKFEYDMEKIIDDWVLMGFLVGNDFIPHLPNM
HIDGGALPVLYRAYMKVLPQLGGYINEAGTLNLSRFEIFIKELGNIDIKNFSDKYADLKW
FEAKRLEGKKIVEENGHVENGKKGESDYLLDLESAKKDIIKCMQRLKCEPQSPQDVEEES
DLINSELDHNEFDVLISESESQSEEDDELFQAEFIQHKTDYYMNKLEYENVNEEVLKSQT
KEYIRAIQWNLHYYYNGVCSWSWYYPHHYAPYISDIKDFADLKFEFELGKPFQPYEQLLA
VLPAASRVLLPLPYQKLMTEDDSLIKMYYPEEFKTDLNGKRMEWEAVVLIPFIEEELLLQ
AMESCNLELTGEEVERNTHGPMLVYRYTPENMQQYNAPKYFPTITASHAKCETVNISDIR
VPIENLVKGAYPGAKFDVYYPGFPTLKHLEYTASLKKAKVRVFEQPSRYESMILQITQPD
DELPQPDAFAKDLLGTSVHVGWPHLVEALAVGISTNDFKYHSTGQIGQYNVVDNKSPVTG
SWKSERNAIVEHYQNRLGINVGKTEMLVHVKLLTGRKYIFKNNKCIALEKQWTNVASAYP
LQTVVHNIRVYEEKFASYNNIEDLFPVGSQCFMLGHPCYGALGEVIDSTETLKNGRIKLC
MKKQEEPDLSPVRHLDHNIAVRFMNIHMASTKLAISKNLFGRITGTIFLIPQKSPDLDLY
DVPRTNIGLNLKFNKRNEEIPGYTRKDGNVWYYSEKAVELVGEYMARFPKVFEYLNFHAG
KDVYEEHKMFPTGDVKEQIREITTWIKQQPYYSIERQVTGSSIIDPEAVKLLEKVVDQFA
VTNTNSKQIVMQVKPHLLYKHSLQVGYLAPDPATTYELYDRVINVREGFTVPMGYKGTIT
AIHKPNGNDASEGTFDVVFDKPFAGGLSINGSSNRAYQMTKPSIINISYGLRVFEEKSGK
PGQLQNMQNQHTRNDVHNNMNFKPNQFNQPPAFGQWFPNNNNYYPHPPAHAPITPFNPNP
NFSAPPNFPPTYNPTYNQTGHSFVPYKTHFALSPGPPQYFPPGPMPAPEPKLNERRDNYP
VHKANMSPDKNKVMLRPEFWQPPPRNTPQSSARNEKKLVLTPDDVFAHARATQQNIAKQS
VGESVPTADTTPNLLYNTAKVSKEFQIRGLGCPNYQYFALKDGNFVASLTMANGDVLVGK
PAKSKDQAAENTAVEALTTLYKDEKVNSSLPQMVPPKPPMRWQNPPYNNQGSPQKQWAKP
QERQHTENWRTERHDNSKNYVPADTWRQPGNQQQTQSRTRVNADAIHRYLHNDAEMQSKT
HNTMPGNAPFIPLQAVRQQRSRTTSSTTETVLKENTNANFPPQKQEVNVPTAQLVTDLSP
TVETVKPKRERKMRIAANFQMASE
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttcctaagttttttagatatataagcgaaaggtatccgtgcctttccgaaata
gtaaaagaataccagattccagaattcgataatttatatctggacatgaacggcattata
catatgtgttcgcatcccgatgatgccgacccgcactttcgtataagcgaggagaaaatt
ttcaccgacatttttcattatatcgaagtattatttagaatgattaaacctcgtaagtta
ttctttatggctgtcgatggtgtggcgccgagggccaaaatgaaccaacaacgtggtcgc
cggttccgttccgccaaggaagctcagacttccgaagcaaaggcgcttgaacgtggtgaa
gttttacccaccgaagcgaggttcgattcgaattgtatcactcccggaaccgttttcatg
gctaacttacatgaacaattaaagtatttcattgttaataaaatatctacggacgcattg
tggaggaactgtaaaattatcctgtcaggacatgagactcctggcgagggtgagcacaag
ataatggattatatcaggtatatgcgagcacaacccggatatgatccaaacactaggcat
tgcttatatggtttagatgccgatttgattatgttaggtttgtgtactcacgaaccgcat
ttttctttgcttagggaggaggttcgctttggcaagaagtcgaataagaggaaaaatatt
cccgagcaaattacattttatttgttacatctttctttaatgagagaatatttagaattg
gagtttcttccattaaaaagtagtttaaagtttgaatatgacatggagaagatcattgac
gattgggtgctaatgggttttttggtgggaaatgacttcataccacatctcccgaacatg
cacatcgacggcggcgccttaccagttttgtatagggcgtacatgaaggtcctaccgcag
ctaggcggttacattaacgaagccggtactctaaacctatctaggtttgaaatttttatt
aaagagttaggcaatatcgacattaagaatttttctgacaaatacgctgatctcaagtgg
ttcgaagcaaaaaggctggagggcaagaaaatagttgaggaaaacggacatgtggaaaat
ggtaagaaaggagaatcagattatttgcttgatttagaatctgcgaaaaaagatatcatc
aaatgtatgcaaaggctgaaatgtgaaccccaaagcccccaagatgtggaagaggaatct
gatttaattaatagcgaattggatcacaatgaatttgatgtactaattagtgaatcagaa
tcgcagagtgaagaagatgacgaactttttcaagcagaatttattcaacataagactgat
tattatatgaataagttagaatatgaaaatgtaaatgaggaagtattgaagtctcaaacg
aaagaatatatacgggcaattcaatggaatctccattattattacaatggagtctgttca
tggtcgtggtattatcctcaccattatgcgccctacatttcggacataaaggattttgca
gacctaaaattcgaatttgaacttggcaagccgttccaaccatatgaacagttattagct
gtattgccagcggctagtagagtccttctcccgctaccttaccaaaaactaatgactgaa
gatgattccctaattaaaatgtactatcccgaagagtttaagacggacttaaacggaaaa
cgaatggagtgggaggccgttgtcctcatacctttcatagaagaggagctgctattgcaa
gcaatggaatcgtgtaatttagaattgacaggagaggaggtcgaacgaaatacgcacggc
ccgatgttagtctatcgatatacccctgaaaacatgcaacaatacaatgcgccgaagtat
ttcccaaccataactgcttcgcacgccaagtgcgagaccgttaacattagtgatatacga
gttccaatagagaatctagtcaagggagcgtatcccggcgcaaagttcgatgtatattat
cccggatttccgacgttgaaacatttagaatataccgcatcactcaaaaaagcaaaggta
cgcgtattcgaacagccgagtaggtacgaaagtatgattttgcaaataacgcaacctgac
gatgaactaccgcaacctgacgcttttgcgaaagatttactggggacaagtgtacatgtc
ggatggcctcatttagtggaggctctggcggtgggtatttccacaaatgactttaaatat
cacagcactggtcagatcggtcagtacaatgtcgtcgataacaaatctcctgtaaccgga
tcgtggaaatcggaaaggaacgccatagtggaacattaccaaaatcggctcggtatcaat
gtcggcaaaacagaaatgttggtacacgttaaactgttgactggcaggaaatacatattc
aagaacaataagtgtatcgcgttagaaaaacaatggaccaatgtagctagcgcttatccg
ttacaaactgttgtccacaacattagagtttacgaggaaaagttcgcgtcctacaacaat
atcgaagatctttttcctgtcggttcacagtgttttatgctgggtcatccctgttacggt
gctcttggtgaggttatagacagcactgagactctgaaaaatggtagaataaaactttgt
atgaaaaagcaggaggagccggacctttcaccagtaaggcatttagaccataacatagct
gtacgattcatgaacattcacatggcgtcgacaaaattagctatatcgaagaatttattc
ggacgaatcacgggaactatctttttaataccgcaaaaatctcccgatcttgacttatac
gacgttcctcggactaacatcggtcttaacctaaaatttaataaaaggaacgaagagatt
ccgggatatacgcgcaaggacggtaacgtgtggtattattctgagaaggccgttgaactt
gtcggcgaatatatggcgcgatttcctaaggttttcgaatatttgaactttcacgccgga
aaggacgtttacgaggaacacaaaatgttcccgactggagatgtgaaggaacaaatacgt
gaaattaccacttggatcaaacagcaaccgtattattctattgaaagacaagtgaccggt
agttctattattgatccagaagcagtaaaattgctagagaaggttgtggaccagtttgct
gtgacaaacactaactcgaaacaaattgtaatgcaagtgaaaccgcatttattgtataag
cattcattacaagtgggatatttggcacccgaccctgcaacaacgtatgaactgtatgat
cgagtcataaatgttagagagggcttcacagttccgatgggatataaaggaacaattact
gccatacataagccaaatggaaatgacgcatctgaggggacttttgacgtagtatttgat
aagccattcgctggcggcctgtcaataaatggttcctcaaatcgagcatatcaaatgact
aaaccatctattatcaacatctcttacggcttacgagtgtttgaggaaaaatctggaaaa
ccagggcaattgcagaacatgcagaaccaacatacccgaaatgatgttcacaataacatg
aattttaaaccaaatcaatttaaccagccgcctgctttcggacaatggtttccgaataac
aataattactatcctcacccacccgcacatgcgccaataacacctttcaatcccaaccct
aatttcagtgcgcctccaaatttccctcccacatacaatccgacctataatcaaacgggg
cactcgtttgttccctacaaaactcattttgctcttagtcctggtcctccacaatacttc
ccgccaggtccaatgccagcgcccgaaccgaaactgaacgaaagaagagataattatcca
gttcataaggcgaacatgtcacctgataaaaataaagtgatgttgcgaccagaattttgg
caaccgccacctcgcaacacgccacaaagttcagcaaggaatgagaaaaaattagtactt
actccagatgatgtttttgctcatgcaagagccacccagcaaaatattgctaaacaatcc
gtgggcgaaagtgtgcctaccgcagacacaactccaaatctgttatacaacaccgcaaaa
gtctcaaaagaatttcaaattcgtggtttgggttgccccaattaccagtacttcgcacta
aaggacggtaatttcgtggcaagccttacaatggcaaacggagatgtgctggtcggaaaa
cctgccaaatccaaagatcaagcagctgagaacacggctgttgaagctttaacaacttta
tataaggatgagaaagtcaattcttcattgccccaaatggtgccacctaagcctccaatg
aggtggcagaatcctccttataataatcaaggaagtcctcagaaacaatgggcgaaaccc
caagagagacaacacacagaaaactggaggaccgagagacatgataattcgaaaaattat
gtaccggcggatacgtggagacagcctggcaaccaacaacagacacagtcacgaacacga
gttaatgcggatgccatccataggtaccttcacaacgatgcagaaatgcaaagcaaaaca
cataatacaatgccaggcaatgctccatttatacctttgcaagcagttcgtcaacaaaga
agtaggaccacctcaagtacaactgaaacagttttgaaggaaaatacaaacgctaatttt
ccaccacaaaagcaagaagtaaatgttcctacggcccagttagtgacagatttgtcaccc
actgtggagacagtgaaaccgaaacgcgaaagaaagatgagaattgccgcaaactttcaa
atggcatctgagtga
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integrated database retrieval system
