Photinus pyralis (common eastern firefly): 116171296
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Entry
116171296 CDS
T07438
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33
KO
K15542
polyadenylation factor subunit 2
Organism
ppyr
Photinus pyralis (common eastern firefly)
Pathway
ppyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppyr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116171296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyr03019
]
116171296
Messenger RNA biogenesis [BR:
ppyr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116171296
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
Beta-prop_WDR5
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_EML
WDR55
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_IFT140_1st
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_Aladin
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_EIPR1
eIF2A
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_HPS5
NBCH_WD40
Beta-prop_SPT8
Beta-prop_DCAF4
PEP5_VPS11_N
Beta-prop_WDR11_2nd
MIOS_WD40
Beta-prop_WDR41
WD_LRWD1
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
116171296
NCBI-ProteinID:
XP_031343917
LinkDB
All DBs
Position
Unknown
AA seq
846 aa
AA seq
DB search
MEFAHPPPVHLPNANMSIPPPNMNMGGTPMGPPPINNTFNQKFDSRNGFNNTRPPFRPFL
NLQRPLPGPLNTMTLEDFDGKRLRKSVMRKTVDYNSAIIVALENRIWQRDYRDRRALQPD
VMYYPDMMPPPSYPDNPINCVTTRFVKTATNKMRCPIFCMAWTPEGRRLVTGASSGEFTL
WNGLTFNFETILQAHDSPVRCMVWSHNDSWMVTGDHAGYVKYWQSNMNNVKMFQAHKEAL
RGISFSPFDSKFVTCSDDGTLRTWDFLRYQEEKILRGHGADVKCVHWHPQKSLIISGSKD
NQQPIKLWDPKTGQSLATLHAHKSTVMDLKWNDNGNWLITASRDHLLKLFDLRNLGQEVQ
TFRGHKKEASSVAWHPTHEGLFCSGGSDGAIMFWHVGADKEVGVIEQAHDSIVWTLAWHP
LGHILCSGSNDHTSKFWTRNRPGDLMRDKYNLNTLPAGISGLEDVDIDEPSVIPGMGPDD
KVEFTLSSETPTTIPGLDIDITSISIEDKFKSKKVPYSKPIPRNFQAQWNETASSEDGTL
SEVINQLVENTSGVIPLQKIAQNANALIIGGKLIAVQPGSKLEAAVAEGSKSLYEYIVSG
HVPELNDVMDQIREEYKSLNPSYDEDNDDMQDLSESNHPPPLMETNPFVVNFTRKPFDSP
NRFMDGRSDRFYDEESRLDQDMRQFNSFNFGNEHSDVDLRNVRNMDVDFRQRDQDMRGDG
RMTDQDFREPFDEDQGFRGRYNDGDDQFDYDDDRNWNDNFGNSRSGSRNNNFQNYRQSNF
GRSEGGRSFRQGDDENWSPPPNDYRNRNNRPRGSARGSQRTNSRGRSGSSRNKGSRNNIL
QRRGRY
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggaatttgcacatccacctccggtacatttgccaaatgcaaatatgtccataccacca
ccaaatatgaatatgggtggaacaccaatggggcctcctccgatcaacaacacctttaac
cagaaatttgactcgcgaaacggttttaataatacgcgcccaccttttcgtccgttccta
aatctccaaagacccctgcccggtcctttaaacacaatgaccttagaagatttcgacggc
aaacgtctgagaaagtctgtgatgcgaaaaactgtcgattataattctgcgatcatagtg
gcattagaaaatagaatttggcaaagggattatcgcgatcgcagagctctccagcccgac
gtgatgtattaccctgacatgatgcctccgcccagctatcccgataatccgattaattgt
gttacgacacgttttgtgaagactgctacaaataaaatgcgatgccccattttttgtatg
gcgtggacgccggaaggtagacgtttagttactggcgccagttcgggagagtttactctg
tggaatgggctcacgtttaatttcgagacgattttgcaagcacacgacagtccagttcga
tgtatggtgtggtcacacaatgacagttggatggtgacgggcgatcatgcgggctacgta
aaatattggcagtctaatatgaataatgtgaagatgttccaggcacataaagaagccctt
cgtggcataagcttcagccctttcgactccaaatttgtgacttgttcagatgatgggacc
ttacgtacttgggactttctacgatatcaagaggaaaaaatactgcgagggcacggcgct
gacgttaagtgcgttcattggcatccacaaaagtcattgatcatttctggtagtaaagac
aatcaacaaccgattaaattatgggatccgaaaacgggacagtcgttagcaacacttcac
gcacacaagtcgactgtaatggatctaaagtggaacgataatggaaattggttaatcaca
gcgtctcgtgatcatttgttaaaactttttgatctcagaaatcttggccaggaagtgcaa
acgtttcgaggtcataagaaagaagcttctagtgttgcttggcatcccacccacgaaggc
ctattttgcagcggaggctcggatggcgcaattatgttttggcatgttggagccgacaaa
gaagtgggtgttattgaacaggcgcacgacagcatagtttggactcttgcgtggcatccg
cttggacatattctttgttctggttcaaacgaccacactagtaaattttggacaagaaac
cgacctggagatctcatgcgtgataaatacaatctaaacactctgcctgcaggaatttct
ggcttagaggatgtcgatattgatgaaccttccgttataccgggtatgggtccggatgac
aaagttgaattcacactgtcttctgagacacccacaacaattccaggactagatatagat
ataacttcaatctcaattgaagataaatttaagtcaaaaaaggttccatacagtaagccc
ataccacgaaacttccaagcacaatggaatgagactgcatcttcagaagatggcacttta
tccgaagtgattaatcagctggtcgaaaatacgtccggtgttattccgttacagaaaatt
gctcaaaatgctaatgcattaataattggggggaaacttatcgctgtccaaccgggatcc
aaactagaagctgccgttgcagagggttcgaagagcctgtacgagtacattgtctccggt
cacgttcctgaactaaatgatgtcatggatcaaatccgtgaggagtacaagtcattgaat
ccgtcgtatgatgaggacaacgatgatatgcaagatctttccgaatcgaaccatcctcct
cctttaatggaaacaaatccttttgttgtgaattttacacgaaaaccgtttgactcccca
aatcgatttatggacggtagaagtgacagattttacgatgaagaatcacgcttggatcag
gatatgaggcaatttaattcctttaatttcggaaacgaacactctgatgtcgatttgaga
aatgtcaggaatatggatgtcgattttcggcaacgcgatcaagatatgagaggagacgga
cggatgacggatcaagattttcgcgaaccatttgacgaggaccagggtttcagaggtaga
tataatgatggtgatgatcaattcgattacgacgatgacagaaattggaatgataatttt
ggaaattcgcggagtggttcgagaaataataattttcaaaattatagacaatctaatttt
ggtcgaagtgaaggtggacgatcgtttaggcaaggtgatgatgaaaattggtctccccca
cctaatgattatcgaaatcgaaataatcgtccgcgtggctcggcgagaggtagtcaaaga
acaaattcgcggggtcgtagtggctcatctagaaataagggatctagaaataacatttta
caacgtagaggacgttactaa
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