Photinus pyralis (common eastern firefly): 116171490
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Entry
116171490 CDS
T07438
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ppyr
Photinus pyralis (common eastern firefly)
Pathway
ppyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116171490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyr03019
]
116171490
03041 Spliceosome [BR:
ppyr03041
]
116171490
Messenger RNA biogenesis [BR:
ppyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116171490
Spliceosome [BR:
ppyr03041
]
Complex B
Other components
Prp19-related factors
116171490
Complex C
116171490
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_15
TPR_12
ARM_TT21
TPR_10
PPR
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
116171490
NCBI-ProteinID:
XP_031344217
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MTARKLIESLEIVFTDDDLPYEEEILRNPYSVKHWLRYIDYKKNAPKHGVNIVYERALKE
LPGSYKLWYNYLKTRRQQARGRCINDSLYEEVNNAFERSLIFMHKMPRIWMDYCTFLTNQ
CKITRTRTVFDRALRALPITQHHRIWPLYLTFIKKHDISETAMRVFRRYLKLCPENAEEF
VEYLIDVKRLDDAAMVLAKIVNDENFASLHGKSNHQLWNELCDLISKNPGEVHSLNVDAI
IRGGLHRYTDQLGHLWNCLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDSYAQFE
ELSLSKRMEEVSKLANPSEDDDIDLELRLARFENLMERRLLLLNSVLLRQNPHNVKEWHK
RVMLYEGKPHEIINTYTEAVQTVDPKLAVGKLNTLWVEFAKFYESNGQVEDGRLIFKKAT
EVPYVRVDDLATVWCNWAEMELRNENYEAALKLMHTATVLPSRKVSYHDDNETVQARLYK
SLKLWSMYADLEESFGTFKSCKAVYDRIIDLKIATPQIIINYGLFLEEHNYYEEAFRAYE
KGISLFKWPNVYDIWNTYLTKFLNRYGGTKLERARDLFEQCLENCPAKYAKPLYLLYSKL
EEEHGMARHAMAVYERATTAVPPEEMFDIFNIYIKKAAEIYGIPKTRQIYENAIEVLPED
RTREMCLRFAEMETKLGEIDRARAIYAHCSQICDPRVTVEFWQTWKEFEVRHGNEDTMRE
MLRIKRSVQAMYNTQVNMMSAQMLSSAGSMSGTIADLAPGAKDDMRMLEAKAAEMVGTSG
SKGGNIMFVRGETQGDKQTGDKVVNPDEINIDEDEEEGEEVEMEIPIEKQNIPSEIFGSL
KRKVGDDDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgacggctcggaaattaatagaatccctggaaattgtgtttaccgatgatgaccttccc
tatgaagaggaaattctgcgtaatccttattcagtaaaacattggctgcgctatatcgac
tacaagaagaatgctccgaaacatggtgttaacatcgtatatgagcgtgcgcttaaggaa
ctgccaggctcgtacaaactgtggtataattatctgaaaacacgtagacagcaagcaaga
ggtcgttgtattaatgattccctttatgaggaggtaaataacgcttttgaacggtcgtta
attttcatgcacaagatgccaagaatttggatggattactgtacatttttaaccaaccaa
tgtaaaattacacgaacgagaactgtgtttgatagagctttacgtgcacttcccattacg
caacatcaccgaatatggccgctttatcttaccttcattaaaaagcatgacatatccgaa
accgcaatgcgagtatttcgtcggtatttaaaactttgtccagagaatgcggaagaattt
gtagagtatttaattgatgtgaaacggttagatgatgctgcgatggtgctggcgaaaatt
gttaacgacgaaaactttgcctctttgcatgggaaatcgaatcatcaactgtggaatgag
ctgtgcgatcttatttcaaaaaatcctggtgaggtgcattccttgaatgttgacgcaatt
attcgtggtggtttacatcgatacaccgatcagttgggtcatttatggaattgtttggcc
gattattatgtacgcagtggcttgtttgatcgagctagagatatttatgaggaagcaatt
cagactgtgaccacagttcgggattttacccaagtttttgattcctacgcccagttcgag
gaacttagtctaagtaagcgcatggaagaggtgtctaaattagcaaatccgtctgaggat
gacgatattgatttagaattgcgtttggctcgattcgaaaatttaatggagagaaggctg
ttgctgttgaattctgttttgctgcgacagaaccctcacaatgtgaaagaatggcacaag
agagtcatgttgtatgaggggaaaccgcatgaaattatcaatacttataccgaagcagtt
cagacagttgacccaaagctggcggttggcaaattgaatacgttatgggtcgaatttgcg
aagttttatgagtccaatggtcaagtggaagatggaagattaatttttaagaaagccacc
gaagttccctatgttagagtagatgatttggcaacggtctggtgtaattgggccgaaatg
gagctgcgcaatgaaaattatgaagcagccctaaagttgatgcatacggctactgtgttg
ccatctagaaaagtttcgtatcacgatgataatgagactgttcaagcacgactgtacaag
tccctaaagctgtggtcgatgtatgccgacctggaggagagttttggcacattcaaatcg
tgtaaagcagtctatgatcggattattgatttaaaaatcgccacaccacaaattataatt
aattacggtctattcttagaagaacacaattactatgaggaagcctttcgggcgtacgag
aaaggaatttcactttttaaatggccgaatgtctacgatatttggaacacctacttaact
aaattcttgaaccgttatggcggtacaaagctggaacgagcgcgagatttatttgagcag
tgtttggaaaactgcccggcgaagtatgcgaaacccctatatttgttatattcgaaactt
gaagaagagcacggaatggcacggcacgcaatggccgtgtacgagagagcaaccactgct
gtaccacctgaagagatgttcgacatattcaacatttacataaagaaagctgcggagatt
tacggtattccgaaaacacgacaaatttatgaaaatgccatagaagtactgccagaagat
cgcactcgtgagatgtgtctgaggtttgccgaaatggaaacgaagcttggggaaattgat
cgcgccagagctatatacgcccattgcagtcaaatttgcgatccgcgggtgacggtagaa
ttttggcagacttggaaagagttcgaggttagacatggcaatgaagatacgatgagggaa
atgttgcgaattaaacgtagcgtgcaagctatgtataatacgcaggttaacatgatgtcg
gcacaaatgttgagctcggcaggctcaatgtcgggaacgatagcggatttggcacctggt
gctaaagacgatatgagaatgctggaggccaaagctgcagaaatggtgggaacgtcaggc
tctaaaggaggcaatattatgttcgttcgtggagagacacagggagataagcaaactggc
gataaagtggtcaatcctgatgagattaatattgacgaagatgaggaggaaggtgaagag
gtggaaatggagatccccattgagaaacagaatataccgtctgaaatcttcggaagtctg
aaaagaaaagtaggggatgatgatgattaa
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