Photinus pyralis (common eastern firefly): 116172909
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Entry
116172909 CDS
T07438
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ppyr
Photinus pyralis (common eastern firefly)
Pathway
ppyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116172909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppyr03041
]
116172909
Enzymes [BR:
ppyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116172909
Spliceosome [BR:
ppyr03041
]
Complex C
Other components
Step II factors
116172909
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
ResIII
AAA_30
T2SSE
Microtub_bd
Flavi_DEAD
ATPase
AAA_16
AAA_7
cobW
SRP54
PhoH
Sigma54_activat
Sigma54_activ_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
116172909
NCBI-ProteinID:
XP_031346044
LinkDB
All DBs
Position
Unknown
AA seq
1177 aa
AA seq
DB search
MDEDDGLHRLEGVSGQKGGLIVKKKPSSFVVPQPSLLGLDKLAAAKRREKEDAARKISFR
MEEDDSSVDVHNQVKEAHSSEKRKFRAPNIETPTYTGGITELARERLIERLNSNAKKEKG
VYASTKDLKKNSREPDKRERYDRRKEREKSERSHTPRFKDEPKTPNLKVKDEVSKSAWDD
DDPVPPKKSSWDFPTPMAHKSSSDWSERSTKSRRDDYKKSEHKSKYKSDTPRFTPVHKYN
LWAKDRKKTGATPGFDNNEELKWNEEEDKEMWEEEQKRIDREWYNMDEGYDVENNPFASV
SDAYTKKKEEQLEQRKRKRMSAQQRQINKDNELWERNRMLTSGVVHSVDVNEDFDEESID
RVHLLVHNIVPPFLDGRIVFTKQPEPVIPVRDPTSDMALVARKGSHLVKVYREQKERKKA
QKKHWELGGTKIGNIMGIKKKEDEEDVRYNKDSDSTDYKTDQKFADHMTKTESSSEFARK
KSFLEQRRYLPVFAVRQELLNVIRENSVVIIVGETGSGKTTQLTQYLHEDGYSKYGMIGC
TQPRRVAAMSVAKRVSDEMGTQLGDEVGYAIRFEDCTSENTVIKYMTDGILLRESLREAE
LDHYSAIIMDEAHERSLSTDVLFGLLREIVAKRHDLKLIVTSATMDSSKFSLFFGNVPTF
TIPGRTFPVETLFSKNPVEDYVDAAVKQALQIHLQPPSGDILIFMPGQEDIEVTCEVLAE
RLSEIEHAPELSILPIYSQLPSDLQAKIFQRSPEGIRKCVVATNIAETSLTVDGIIFVID
SGYCKLKVYNPRIGMDALQIYPISQANANQRSGRAGRTGPGQAFRLYTERQYKDELLVTN
VPEIQRTNLANTVLLLKSLGVEDLLQFHFMDPPPQDNILNSLYQLWILGALDNTGLLTKL
GRQMAEFPLDPPQCQMLIVSSEMGCTEEILTIVSMLSVPSIFYRPKGREEEADSVREKFQ
VPESDHLTYLHVYNQWKQNNYSSHWCNEHFIHVKAMRKVREVRQQLKDIVIQQKLKIDSC
GTHWDVVRKCICSAYFHQAARLKGIGEYVNLRTGMPCHLHATSALFGLGNTPDYVVYHEL
VMTAREYMQCVTSVDGHWLAELGPMFFSVKETGKSGRAKKKQAAEHLQEMENQMHMAQEE
MRARKEAADKRDAALNKGQEIISAGTTPRRTPARLGL
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagatgacgggctccatcggctggaaggtgtttctggacaaaaagggggttta
atcgtaaagaagaaaccttcatccttcgttgtcccacaaccttccttgttgggtttagat
aaattggcggcagcgaaaaggcgagagaaagaagatgcggctagaaaaatatcatttcga
atggaagaagatgatagcagcgttgatgttcacaatcaggtaaaagaagcacactcatcg
gaaaaacgaaagtttcgcgcaccaaacatcgagactccaacctacactggcggcataact
gaattggcacgagaacgcctgattgaacgtttaaattccaacgcaaagaaggaaaaggga
gtttacgccagcactaaagatctaaaaaagaacagtcgcgagccggataaacgcgagcga
tacgatagacgcaaagaaagggagaaatccgagagatcgcacactcctcgctttaaagat
gaacctaaaacgccgaatttaaaggtgaaggatgaggtttcgaaatcggcgtgggacgac
gacgatccagttcctcctaaaaaatcctcgtgggattttccgacacctatggcgcacaaa
tcgagcagcgattggtcggaacggagcacgaagtcgcgaagggacgactataagaaatcc
gagcataagtcgaagtacaaaagtgatacgcctcgttttactcctgttcacaagtataat
ttgtgggcgaaagatcgcaagaagaccggggccactcctggatttgacaataatgaggag
ttaaagtggaacgaggaggaggacaaggagatgtgggaggaggagcagaagcgtatcgat
cgcgagtggtataatatggacgagggatacgatgtcgagaataacccgtttgcgagcgtt
agcgatgcgtacacgaagaagaaggaggagcaactcgagcagcgcaaaaggaagagaatg
tcggcgcagcagagacagatcaataaggataacgagctgtgggaacgtaatcggatgtta
acttccggtgtcgtgcactcggttgacgttaatgaagatttcgatgaagaatcgatagat
cgagtccacctgcttgtgcataacattgttcccccgtttttggatgggcgaattgtattt
actaagcagcccgaaccggttattcccgtacgtgatccgacttcggatatggcgctggtc
gcgcgtaaaggctctcacctagtcaaagtctacagggagcaaaaggagcgaaagaaggca
cagaaaaagcactgggaattgggcggtacgaaaataggtaacataatgggtatcaaaaag
aaggaagatgaagaagacgtacgttacaacaaggatagcgatagtacggattataagacg
gatcaaaaattcgctgatcacatgacgaaaactgaaagcagtagtgaatttgcgaggaag
aaaagttttctcgaacagcggaggtacctgccggttttcgcagtgagacaagagctgttg
aacgttattcgtgagaattcggtggtgattatcgtaggtgagacgggcagtgggaaaacg
acccaactaacacagtatttgcacgaagacggttacagtaagtacggtatgatcgggtgt
acacagcctcgtcgtgtagccgcaatgtcggtggcaaaacgtgtcagcgacgagatgggg
actcagttgggggatgaagtcggttacgccattcgttttgaggactgtacttcagaaaat
acagttatcaagtatatgactgatggaattttacttagggaaagtttacgagaggcggag
cttgaccattatagtgccattattatggatgaggctcacgagaggtctctaagtactgat
gtcctttttggattactgagggagattgtagcaaaaagacacgatttaaaactaattgtg
acatcggccaccatggattccagcaaattctccttattcttcggtaacgtaccgacgttc
acaattcccggcagaaccttcccggtcgaaacgctgttcagcaaaaacccggtcgaagac
tatgtagacgccgccgttaaacaagccttgcaaatacacctccaaccgccgtcgggcgat
attctaatttttatgcctggccaagaagacatcgaagtcacgtgtgaagtgctcgcggaa
cgtttaagcgaaattgagcacgcacccgagctctcgatcctccccatttactcccaactc
ccctcggacttacaagcgaaaattttccaacgttcacctgagggcatacgtaagtgcgtc
gtcgcgactaacatagccgaaacgtcactaaccgtcgacggcatcatcttcgtcatcgat
tccggctattgcaagttgaaagtgtacaatccacgcataggcatggacgctttgcaaatt
taccccattagccaggccaacgcaaatcaacgttccggacgcgcgggaagaaccggtcca
ggacaggcgtttaggctttacaccgaacggcagtacaaagacgaacttttggtgaccaac
gtacctgaaattcaacgaacaaacctcgctaatactgtacttctgctaaagtcactcggg
gtcgaagatctcctgcagtttcacttcatggaccccccacctcaggataacattcttaat
tcgctgtaccaactgtggatcttgggcgccttggacaacacagggttgctcacgaagcta
ggaaggcaaatggccgaatttccacttgatccacctcaatgtcagatgcttattgtttcg
agcgaaatgggttgcactgaggaaatactcaccattgtttccatgttgtctgttccatca
atattttaccgtcccaaaggaagggaggaggaggccgatagtgttcgtgaaaaattccaa
gtaccggaaagcgaccacctcacatacctccacgtttacaaccagtggaagcagaacaat
tactcgtcgcattggtgtaatgagcattttattcatgtgaaagccatgaggaaagtgagg
gaagtgcgacagcaattaaaagacatagtaattcaacaaaagttgaaaatcgattcatgt
ggtacccattgggatgttgtgagaaagtgtatttgctcagcctacttccaccaagccgcg
cgtctgaagggtataggcgaatatgtaaatttacgtacaggaatgccctgtcatttgcac
gcgacgtccgcactgttcggactcggcaacaccccagattacgtcgtttaccacgagtta
gtgatgactgcgagagaatacatgcagtgtgtgacatccgtagacgggcactggctggcg
gaactcggccccatgttcttctcggtaaaagaaactgggaagtctgggcgtgccaagaag
aagcaggcggccgaacacctgcaggagatggaaaatcaaatgcacatggctcaggaggag
atgcgcgcgcgtaaggaggcggccgataagcgtgacgccgcccttaacaaaggacaggaa
attataagtgcagggacgacacctaggaggacacctgctagattagggctttaa
DBGET
integrated database retrieval system
