Photinus pyralis (common eastern firefly): 116174410
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Entry
116174410 CDS
T07438
Name
(RefSeq) uncharacterized protein LOC116174410 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ppyr
Photinus pyralis (common eastern firefly)
Pathway
ppyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppyr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116174410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppyr03021
]
116174410
03019 Messenger RNA biogenesis [BR:
ppyr03019
]
116174410
Transcription machinery [BR:
ppyr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116174410
Messenger RNA biogenesis [BR:
ppyr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
116174410
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_helical
Pcf11_C
zf_PCFS4
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
116174410
NCBI-ProteinID:
XP_031348183
UniProt:
A0A1Y1LME4
LinkDB
All DBs
Position
Unknown
AA seq
1697 aa
AA seq
DB search
MAGISEIREEYTSSLQDLTFNSKPLISVLTILAEENVPHAKEIVEAIESHLSRVRVEVKL
PVLYLIDCIIKNVDGPYTALFCQNIVSTFCNVFKQVDEQTRAEMFRLRQTWNDVIPPKKL
YALDVQIAQLDPAWPVTAPPPSIHFNPKFLKTTTTTASGTLTAPISSKLNKNSMTNTSSL
DTKTLSMQQKLINKQKELLELQQRKLQLELLQTQVKLQEQQLIQNTSTVKTTPQVNGPHT
QNLLLKPEVAKQMSSSKNKTKTSPPQSNAKSSSGGSKISPANSNPANARPIRDPRLLRQQ
QQQQQAQQALSNVNANVHLESKSKFGSQHTLDSENKFVNSKTSVRNDHVEHRLVNNKGNI
DSHGKSKTSPHSSPLKHTQKIGSSLRKNSKFSRDSKTPNISDTSSDKITIADPSSKAGRG
QPSKPRTFGRSFLKIKKKSAEKDSPDKVAGTVSPSNTTGSFRNDKDSSALNRADKKSDKQ
LPKSCKSDKEKFKSDGSFKDPKGSVKNRNYMRRNRNASASPEPTQDLDLRIRAPPEKQPR
LQGENNIDDKTGNDSPKQPVDVDLRQLPSVISKKRPSTENQETSNAKKSRTEMFDVLFGS
EDTDLRQLPPVLSPPMPSERPPTPPAPIISDKLEQIVDESRKDDKGESNAPKNSNLDALR
AKLANAVNQTKLKESESLPKEKLQDAKKGRAKSFGSDKMDKIIISSADEESIKAGNMTKA
QKNALMHKILAQIETHKLREAQRKECESVSNPSLQPISDEEPNFSGSESDEEVKKRIGKS
DRDDRTSPIPSQVSQLEGTYPPYSRQADQRDPRRTRAWRGRHRKVWDYPPTVPRPTVRPS
YRDNWVRPMNDAWRPQPLYSNNFGEHVSPFSREHGTQSPNSNSQELPTLEYAHPDSYKFI
TIDNEPREIRYYDETAIVFMNSSDPREISFHNGTRRIFFDGEPFLLKLNSPYEEISLKGN
VHRVRLGAPSREIFIDGKGYECYFDKNEKVIDLDGNKIFVKLEAPPPQVKIGQEKRLDLV
AGKVQLVVDARNMYTIFLDAKLQTFVLENVTHTLKFVDSLRAALINDVRFEIEYGGLPKP
IMLHDKKHFIRFSVLPEGIKPGNVNIKDMEVTQPVENEALSESVSTLPYENTSQDSLPEK
PKEFDGTSPEHNSNSPHNFHHPNFNNLDMLSSVIASSMLPSSAESGYQVEDTNSQDVQST
ITIPRDTPQVKNPPSLNINDLFQRLVATGIVTTAATAPPQPVEEPPPPSPPKPSRSTAHH
VSKHFKPPTFSKPETLKTRRPPLIHMLYTGMQCSSCGMRFPADQTMYYSQHLDWHFRQNR
RGKKNIRKAASRRWHYTMLDWRNYEEIEDLEEREKNYFENQQNPDGTNDDADEEIEIPCV
PADPNVPNAACEVCRDKFEQFYNEEKDEWQLRMAIRVEDKTYHPLCYEDYQASLVDPSLE
ESKLNVEEQDVDPSIPGLGAEQSANETYDDVMEVIDNIDEEEAPPPVVEEPKVPNISIDD
DEEEVDDDVILNEVAPERIVVDDDDKDDYVSGGGLIPGVVVKVEPVDDGFVDVEGGLVRT
KEVKLKAEDAVPATDDVETVAPAVQIAPDSVDTTHTEVVSTIDGNVEFESGVNPSTGISG
KIKINITKPIPAIVAKETKETVEEQLQTADCIDPSQPLPPGEEPVQLNIKPALQGLELKR
QPTVKKGSELTGLCSIM
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atggccggaataagcgaaatacgcgaggagtacacgtcgagcctgcaagatttgacgttc
aacagcaagccgctgatcagcgtacttacgatactggcggaagagaacgtcccgcacgcc
aaagaaatcgtcgaggcaatcgaatcgcatctctcaagggtgcgcgtcgaggtcaaacta
cctgttctgtaccttattgactgtattatcaagaacgttgatggaccgtacactgcactt
ttttgccagaatattgtgtcgacgttttgcaatgttttcaagcaggtggacgaacagacg
cgagccgagatgttcaggctgcgacagacgtggaacgatgtcataccgccaaaaaagctg
tacgctttagatgtacaaattgcccaattggatccggcctggcccgtaacagcgccgcct
ccgagtattcactttaatcccaagttcttaaagacgaccaccaccacggcctccggaacg
ctaaccgcgccgattagttctaagttaaacaaaaactccatgacgaatacgtcgtcgctc
gacacgaaaaccctaagtatgcaacagaaactgatcaataagcagaaggagttactcgaa
ttgcagcagcgtaagttgcagttggagctgttacaaacgcaagtaaaattacaagaacaa
caacttattcaaaatactagcactgtgaaaactacgccgcaagttaacggtcctcataca
cagaatttgcttctcaaacccgaagttgctaaacaaatgtcctcttcaaaaaacaaaaca
aaaacctcgccgccccaatcgaacgcaaagagctcgtcgggtggttcgaaaatttcgccc
gctaatagcaatccggcgaacgcgcggccgataagggaccctcggctattgcgccagcag
cagcaacagcagcaagcgcagcaagcattgtccaatgttaatgctaatgttcatttagag
tctaagtcaaaatttggatcacaacacacacttgattcagagaataaatttgttaacagt
aaaacgagtgttcgaaatgatcacgtcgaacatcgtctagtaaataataaaggtaacatt
gattctcatggcaagtctaagacttcgcctcattcctctccccttaaacacacccagaaa
attggcagttcattacgtaaaaatagtaagttttcacgtgattccaaaacaccaaacatc
tcagatacatcatcagataaaattacaatcgccgatccatctagtaaagcaggtagaggt
caaccatctaaaccacgcacatttggtagatcatttttaaaaataaaaaagaaaagtgcg
gagaaagattctcctgataaggttgcaggtactgtctctccatcgaatacgactggctca
tttcgcaacgataaagatagtagtgctttaaatcgtgcagataaaaaaagtgataaacaa
ttacctaaaagttgtaaaagtgataaagaaaagttcaaaagtgacggttcttttaaggac
cccaagggttcagttaagaatcgtaactatatgagacgcaaccgtaacgcttcggctagc
ccggaacccacacaagatctggacctgcgcattcgagcaccgccggaaaagcaaccccga
ttgcaaggtgaaaacaacattgacgataaaaccggaaatgacagcccgaaacaaccagtt
gatgtagacttgcgtcagttgccttccgtgataagcaaaaagcgaccctcgaccgaaaac
caagagacttccaacgcgaaaaagagccgaaccgaaatgttcgatgttttgtttggtagc
gaagatacggacttaagacagctgccgcccgtattatcaccccccatgccgtcggagcgc
ccaccgacaccccccgcgccgattatatcggataaactggaacagatcgtcgacgagtcg
agaaaggacgacaagggcgaaagtaacgcgccgaaaaactccaatctcgacgcgttacgc
gcgaaattggcgaacgcggttaatcagaccaaattgaaggaatcggagagtttgcccaag
gaaaaattgcaggacgcgaaaaaggggcgcgccaagagtttcggttcggacaaaatggat
aagattataatatcgtcggccgacgaggagtcgattaaagcgggaaatatgacgaaggcg
caaaaaaatgcgttgatgcataaaattctggcgcaaattgaaacgcataagttgagagag
gcccaaaggaaggaatgcgaaagtgttagcaacccgtccctgcagccgattagcgatgag
gagcccaattttagcggtagcgaatcggatgaggaggtaaagaagcgaataggcaagagt
gatagagacgaccgcacgtctcccattccctctcaagttagccaattggaaggtacatat
cctccgtactcgcggcaagccgaccaacgcgatccgaggcgaacaagagcttggagaggc
agacataggaaagtttgggattatccgcctacggtgccgcgtccgactgtgcgaccaagc
taccgcgacaactgggtgcgcccaatgaacgacgcctggcgtccacaaccgttgtactcc
aataatttcggcgagcacgtcagcccgttctcgagggagcacgggacgcaatctcccaat
tcgaacagccaagaattgccaactttagaatacgcccatcccgatagctacaaatttata
acaatagacaatgaacctagggaaatacgttactacgacgaaacggctatcgtatttatg
aattcctcagatcctagagagatctcctttcataatggtactagaagaattttcttcgac
ggcgagcccttcttgcttaagctaaattctccctacgaagaaatctcgcttaaaggaaac
gttcatagggtgagactgggagcgccatctcgcgagattttcatcgacggcaaaggatac
gaatgctacttcgacaaaaatgaaaaagtcatcgatttggacggcaataaaatcttcgtc
aaactggaggcgccgccgccccaggtaaaaatcgggcaggaaaaacggctggacttagtc
gccgggaaagtacaattggttgtggatgctagaaatatgtacacgatatttctcgacgcc
aaactgcaaacttttgtattggagaatgttacgcacactctgaaattcgtcgactctctg
cgggccgctttgattaacgacgtacgctttgaaatcgaatacggcggtcttcctaaaccg
atcatgttgcacgataaaaaacactttatccgattttccgtgttgccggaaggaattaaa
cctgggaatgtcaacattaaagacatggaggtgactcagcctgtggagaacgaggcgcta
agtgagtcggtatcgacgttaccttacgaaaacaccagtcaggactcgttgccggagaag
ccgaaggaattcgatgggacgtcgccggaacataactccaactccccgcataactttcac
caccctaactttaacaatctcgatatgctgtccagcgtaattgcctcgtcaatgttaccg
agctcggcagaaagcgggtaccaagttgaagacacaaactcgcaagacgttcaaagcaca
atcacgattccaagggacactccccaagtgaaaaacccgccctctttaaatatcaacgac
ctattccaaagacttgtcgcgaccggtatagtcacgacagcggcgaccgcacccccacag
cccgtagaagaacctccgcccccgtcccctcccaaaccctcgcgttctaccgcccaccac
gtttcgaaacacttcaagccgcccacgtttagtaaacccgaaactttgaaaactcggagg
cctcccttgatccacatgctgtacaccggaatgcagtgcagcagttgcggcatgcgcttt
ccggccgatcagaccatgtactacagtcagcatctcgattggcacttccgtcagaatcga
aggggcaaaaagaatatacggaaggcggcgagtcgccggtggcactacacaatgttggat
tggcgaaattacgaggaaatcgaagatttggaagagagggagaaaaattacttcgaaaat
caacaaaacccggatggcactaacgacgacgcggacgaagagatcgagattccttgcgtt
ccggcagatccaaatgtgccgaacgcggcgtgcgaggtctgccgagataagttcgagcaa
ttttacaacgaggagaaggacgagtggcaattacggatggcgattcgagtggaggataag
acctatcatcccctttgctacgaagattaccaggcgtcgttggttgatccgtcactggag
gaatccaaactgaatgttgaggaacaggatgtcgatcctagcattcccggtttaggggcg
gagcagtccgctaatgaaacttacgatgatgtcatggaggttattgacaacatcgatgag
gaggaggcgccaccacctgttgttgaagaaccgaaggtgcccaatatcagtattgacgat
gacgaagaggaggtggacgacgatgtcattttaaatgaggttgcccccgaaagaattgtc
gtggatgacgacgataaggacgactatgttagtggtggcggactaattcccggagtggtg
gtcaaagtggaacctgtcgatgacggtttcgtcgatgtggaaggtggcctagtcagaact
aaggaagtgaaacttaaggctgaagatgctgttcctgccactgatgatgtggaaactgtt
gcgcctgcagtacaaatagcaccagactctgttgatacaacacatacagaggttgtgagt
acaattgatgggaatgtagagtttgagtcgggtgttaatccgtcgaccggtattagtggt
aaaattaagataaacataacgaaacctattccagcgatagtcgcgaaggaaacaaaggag
acggtagaggaacaattacagactgcggattgtatcgatcccagtcaacctctaccgccc
ggcgaggaacccgtccaactcaacatcaaacctgcactgcaagggttggaattaaaaaga
caacccacggtgaaaaaaggttcagagttgacgggtttgtgttctataatgtga
DBGET
integrated database retrieval system
