Photinus pyralis (common eastern firefly): 116176567
Help
Entry
116176567 CDS
T07438
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ppyr
Photinus pyralis (common eastern firefly)
Pathway
ppyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116176567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppyr03019
]
116176567
03041 Spliceosome [BR:
ppyr03041
]
116176567
03009 Ribosome biogenesis [BR:
ppyr03009
]
116176567
03016 Transfer RNA biogenesis [BR:
ppyr03016
]
116176567
Enzymes [BR:
ppyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116176567
Messenger RNA biogenesis [BR:
ppyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
116176567
Spliceosome [BR:
ppyr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116176567
Complex C
U4/U6.U5 tri-SnRNP related factors
116176567
Ribosome biogenesis [BR:
ppyr03009
]
Eukaryotic type
Pre-60S particles
Helicases
116176567
Transfer RNA biogenesis [BR:
ppyr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
116176567
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
Motif
Other DBs
NCBI-GeneID:
116176567
NCBI-ProteinID:
XP_031351055
LinkDB
All DBs
Position
Unknown
AA seq
1029 aa
AA seq
DB search
MEESIDNLFSCFEESEEPATETDVSLNFRSNTDTTDESESKGIKRKSDNDERTPSKQLRV
DDEIAVDDINFDEFKNRIVVHAIESLESCTHEVAYPPGQQYVPLIENGGEPAKVYPFVLD
PFQKESLLCIDNNQSVLVSAHTSAGKTVVAEYAVAISLKKKQRVIYTTPIKALSNQKYRE
FYDEFKDVGLVTGDVTINPTASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRDKE
RGVVWEETLILLPHNVRFVFLSATIPNARQFVEWVAHLHQQPCHVVYTDYRPTPLQHFIF
PAGGQGIHMVVDETGTFKDENFNTAMSVLQSVGDAGKGDQRGRRGGVAGKDPSQSNIFKI
VKMIMERNFAPVIVFSFSKKDCEAFAMQMTKLDFNTTAEKQLVDEVFANAMDVLSDEDRH
LPQVDNLLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVL
FTGMRKFDGKEYRWITSGEYIQMSGRAGRRGLDDKGIVILMVDEKVPPAAGRDIVKGAPD
PINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQAAIPGLYEKYNSALNQYNNFDI
KNEEKIQSYYLIRKELDALAVTFRRYITKSQYLIPFLQPGRLVKIKTEDAEYDWGMIVNF
KKVAADKKGRSNPLHSSTKVQVDILLNILPTKDENSKDSIPKPCPEGQAGEVEVVAVCST
LITHISSVRLYCPHDLRSNDSRKGMLKALKEVKKRFDKPGPPLLNPVSDMKIKDPEFLEV
VKKIEHLEKKMYEHPMHDDPSLSEEYSRYEKKVICEDELAVAKQKLSEAKSVLQLDELKC
RKRVLRRLGFCSNADVIELKGRVGCELSSSDELLLTEMIFNGVFGQLTPAQCCAILSCFV
CDEKCSEAPKLCEDLSGPLRQMQEMARRIAKVSNEARLDLDEESYVEKFKPSLMDVVFAW
CNGAVFSELCKMTDIFEGSIIRCMRRLEELLRQMVQASKTIGNTDLEDKFNTAIKIIKRD
IVFASSLYL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatcgatagataatttattctcctgcttcgaagagagcgaagagcccgctact
gaaaccgacgtgtcccttaacttcagatcgaacacggacacaacagacgagtcggaaagt
aagggaattaagcgtaaatctgacaatgacgagaggacacccagtaagcagctgcgagtg
gacgacgaaatcgccgtagacgatataaactttgacgaattcaaaaatagaattgtagta
cacgcaatcgagtccttagagtcttgcactcacgaagtggcgtacccacccggtcaacag
tacgttccattaatcgaaaacggaggcgaacctgcgaaagtataccctttcgttttggac
ccgtttcaaaaagaatccttgttatgtatcgacaacaatcaatcggtactggtatccgcg
catacgtcagccggaaaaactgtcgtcgcagagtatgctgttgctatctcacttaagaaa
aagcaacgtgtgatatacacaactccaataaaagcattgtccaatcaaaaatacagagaa
ttctacgacgaatttaaggatgttggacttgtaacgggcgatgttactattaacccgacc
gcttcgtgtttgattatgacaactgagattttacgaaacatgctgtacagaggatctgaa
atcatgcgtgaggttggctgggtcgtttttgacgaaattcactacatgcgtgacaaggag
cgcggtgtcgtttgggaagagacactaatactgctgccgcacaacgtgcgctttgtgttt
ctctccgcgaccataccgaacgcgcgccagttcgtggaatgggtcgcgcatttacatcaa
cagccctgccacgtcgtttacaccgattatcggccgacacctttacaacacttcatcttt
cccgcgggcggacagggaattcacatggtcgttgatgagacgggtacttttaaggacgaa
aattttaatacggccatgtcagttttgcaaagcgtcggcgatgccggtaaaggtgatcag
agaggacgaagaggcggagttgccggtaaagatccgtcgcagagcaacatatttaagatt
gttaaaatgattatggaaagaaactttgcgccggttatcgtttttagttttagcaagaag
gactgcgaggcttttgcgatgcagatgaccaagctagattttaatacaactgccgaaaaa
caattagtcgacgaggtgttcgctaacgccatggacgttctctctgacgaagatcgtcac
ttacctcaagtagacaatctacttccacttttacgacgtggcattggtatccaccacggc
ggtttattgccgattttaaaggaaacaatcgagattcttttcggcgaaggattaatcaag
gcactatttgcgaccgagacgttcgcgatgggcctgaatatgcccgcacgtaccgtttta
tttacggggatgcgtaaattcgacggcaaggaatatcgatggattacttctggggagtac
attcaaatgtccggtcgtgccggtagaagagggctcgacgataagggtatcgttatatta
atggtcgacgagaaggttcctccggctgccggtcgagacattgtgaaaggggcacccgat
cccattaactctgctttccatcttacatataatatggtcctgaatctgctgcgcgtcgaa
gaaattaatcccgagtacatgctggagcgctcgttttaccagtttcaaaatcaagcggcc
attcctggattgtacgaaaagtacaacagcgctttaaaccaatataacaactttgatatc
aagaacgaagagaagattcagtcttattatctcatacgcaaagaactagatgcattggca
gttacttttaggagatatattaccaagtcgcagtatctgattccatttttgcagccgggg
cgacttgtcaagataaaaacggaagatgccgaatacgattgggggatgatagtcaacttt
aagaaggtagccgccgacaagaagggaagatccaaccccttgcactcttcgactaaggtc
caagtcgacatactcctcaacattcttcccaccaaggacgagaatagcaaagattcgatt
ccgaagccttgtcccgaggggcaggccggcgaggtcgaggttgtcgcggtctgttcaacg
ttgataacccacatctcgtccgtacgactgtactgcccccacgatcttcgatcgaacgac
agccggaaaggcatgctgaaagctttgaaagaagttaaaaaacgattcgataaaccgggg
cctcccttactcaatcccgtcagtgacatgaaaatcaaggatcccgagtttctcgaggtc
gttaaaaaaatcgaacatctcgaaaagaaaatgtacgaacatcccatgcacgacgatccg
tctttaagcgaagagtattcgagatacgagaagaaagtcatttgcgaggacgagctcgcc
gtggccaagcagaagttgtccgaggcgaaatcggttttgcaactcgacgagttgaagtgc
cgcaagagggtgcttcgacggttgggtttttgctctaacgctgacgttatcgagttgaag
ggaagagtcggatgcgagttgagcagctcggacgagttgcttcttaccgagatgattttc
aacggggtgtttggccagttgacgcccgcccagtgctgtgccatcctcagctgtttcgtc
tgcgatgagaaatgttccgaagcgcctaagctctgcgaggacctgtcgggaccattaagg
caaatgcaggaaatggcgcgacgcatcgcaaaggtgagcaacgaggcccgtttagatttg
gacgaggagtcctacgtcgaaaaattcaagccatctcttatggacgtggttttcgcgtgg
tgtaacggggcggtttttagcgaactatgtaaaatgaccgatattttcgagggttcaatt
ataagatgcatgagacggttggaggagttgcttagacagatggtgcaggcctcgaagacg
attggcaacacagatttggaggataagtttaataccgcgattaaaataattaaaagagac
attgttttcgcgtctagtctttatttataa
DBGET
integrated database retrieval system
