Photinus pyralis (common eastern firefly): 116177342
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Entry
116177342 CDS
T07438
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppyr
Photinus pyralis (common eastern firefly)
Brite
KEGG Orthology (KO) [BR:
ppyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppyr03016
]
116177342
Enzymes [BR:
ppyr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
116177342
Transfer RNA biogenesis [BR:
ppyr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
116177342
Prokaryotic type
tRNA splicing ligases
116177342
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF5077
Motif
Other DBs
NCBI-GeneID:
116177342
NCBI-ProteinID:
XP_031352165
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRSYNDELKYLEKINDYCWRIKIGFQPNMKVEGCFYVNAALEKLMLDELRNACRPGMA
GGFLPGVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNMAAFDMNDPQSIVSPGGVGFD
INCGVRLLRTNLWEKDVLPVKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPATVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAAGKMGIEEKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIH
SEEGQNYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFQMSPDDLDMHVIYDVSHNIAKVE
EHLVDGKPKTLLVHRKGSTRAFPPGHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTESGM
EQTFGSTCHGAGRALSRAKSRRNLDYTEVLRKLDDMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISNKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgcgtagttataatgacgaacttaaatatttggaaaagatcaacgattactgc
tggaggattaaaatcggcttccagcccaatatgaaggtggaagggtgtttctatgttaat
gccgcattggaaaagcttatgttggatgaacttcgtaatgcatgtaggccagggatggcg
ggtggctttttaccaggagtcaaacaaattgccaatgtcgccgcactaccaggaattgtt
ggtagatctattggcttgccagatgtgcattccggatatggttttgccattggtaatatg
gcagctttcgacatgaatgatccacagtcgatagtatcaccaggtggagttggcttcgat
attaactgtggagttcgattgttgagaaccaatttgtgggagaaagatgtactgcctgta
aaagaacaactggcacaaagtttatttgatcatatccccgttggggtgggatcaaaaggt
ataatcccaatgaatgcgcgtgacttggaggaagcgcttgagatgggtatggactggtct
ctgcgtgaagggtatgtgtgggctgaggacaaagaacattgcgaggagtatggtagaatg
ttaaacgcagatccggcgactgtgagtatgagagctaagaaacgtggtttacctcagtta
ggcacactgggcgcaggcaaccactatgccgaaattcaagtggtcgacgaaatttatgac
aagtgggctgcaggcaaaatgggcattgaagaaaaggggcaagtatgtgtaatgattcat
tctggaagtcgaggtttcggtcaccaagttgcaactgatgcccttgttcagatggaaaag
gctatgaaacgtgataacattgaaacaaacgaccggcagttggcttgtgcccatattcac
tctgaagaaggccaaaactacttaaaatcaatggcagcagctgccaatttcgcatgggta
aatcgtagctctatgaccttcctgagtcgccaagcctttgccaaacagttccaaatgtcc
ccagacgatcttgatatgcacgtaatttacgatgtatctcataatatagccaaagtagaa
gagcaccttgtcgatggcaaaccaaaaaccctgctggttcacagaaagggctccacacgg
gcatttccccctggtcacccactgattccagtcgactatcaactaacaggacaacccgtg
ttaattggtggaacaatgggaacatgcagttatgttctgacaggaacagaatccggaatg
gagcagacttttggttcaacttgtcacggcgctgggcgtgcgttatcgcgagccaaatca
aggcgaaatttggattacactgaggttttaagaaaacttgatgacatgggtatatcaata
cgagtggcatctcccaaactggtcatggaagaagcacctgaatcatacaaaaatgtaact
gatgttgtaaatacctgccacgctgctggaattagtaataagtgtataaaattaagacca
attgctgtaattaaaggataa
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