Photinus pyralis (common eastern firefly): 116178297
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Entry
116178297 CDS
T07438
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ppyr
Photinus pyralis (common eastern firefly)
Pathway
ppyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116178297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppyr03041
]
116178297
Enzymes [BR:
ppyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116178297
Spliceosome [BR:
ppyr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116178297
Complex B
116178297
Complex C
U2 SnRNP specific factors
116178297
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF6801
ERCC3_RAD25_C
Cas3-like_C_2
TAF1D
Motif
Other DBs
NCBI-GeneID:
116178297
NCBI-ProteinID:
XP_031353620
LinkDB
All DBs
Position
Unknown
AA seq
710 aa
AA seq
DB search
MSGFGYPGFQLSSGKRASHNAVPPPPPTTGVSKQGYSTMNAISQNALSAAWGGSRKRAAT
EDEYFDDEDDESTPTLAYIPAPGSPTHVIEEKNDGAGEDDEEDPLDAYMAGIEKQMKVQP
KTDDTKPQTGIRDDLEEEDDEESYYRYMEENPTAGLAPVEEDTPEVEYDEDGNPLPPARN
RIIDPLPPIDHSTIEYKPFKKDFYTVHSEIQALTSQQVTELRGTLGLTVTGTSAPRPVSS
FGHLGFEDKLIKAIIKAEYTTPTPIQAQAVPCALSGRDVLGIAQTGSGKTAAFLWPMLVH
INEQPPVQEGEGPIALILAPTRELAIQIYNEARRFARIYDIRVICAYGGGSKWEQSHALK
EGAEIVVATPGRIIDHIKGGATNLQRVTFLVLDEADRMFELGFEPQVRSVCNHVRPDRQT
LLFSATFRKRIEKLARDALKDPVRISQGLTGQASEDVTQHVLLLANPQAKRNWLFNHLVE
LLSAGSVLLFVTKKLDAEQVANDLKVKEFDCLLLHGDMDQADRNRVIMTFKKNECPLLVA
TDVAARGLDIPHVRTVINFDIARDIDTHTHRVGRTGRAGTQGTAYTLLTDKDKEFAGHIV
RNLEAAHQEVPQEVLDLALQSCWFRKARFKLKDQNPNVGGLGLGYKEKVGRPQASTPSTQ
LIQPPKAGPATDRLSAMKAAFKAQYSSQFTASSEHPPPNQPSSRKKTRWE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgagtggattcggttacccgggctttcagttatcaagtggcaaacgtgctagtcacaat
gcggtaccaccgccgccaccaacaactggtgttagtaaacaaggttattcaactatgaac
gcaatcagtcaaaatgctctttcggcggcttggggtggaagtcgtaaaagggcagccact
gaggatgagtactttgacgacgaagacgatgaaagcacaccaactttagcgtatattcca
gcaccgggtagtcctactcacgtgatcgaggagaaaaatgacggcgcaggcgaagacgac
gaggaagacccactcgatgcgtacatggcaggcatagagaagcagatgaaagtacagccg
aagactgatgacaccaagccacagacgggtatacgggatgatttagaagaagaagacgat
gaggagtcgtattatcgatacatggaggagaatcccactgcaggtttagccccagtagaa
gaagatacaccggaagttgagtacgacgaagatggaaatccattaccaccagcacgcaat
cgcataatagatcccctacccccaattgatcattctacaattgaatacaaaccatttaaa
aaagatttttatacagttcattctgaaatacaagctctcacatcgcaacaggtaactgag
cttcgtgggacgttggggttaactgtaacaggaacttctgctcctcgaccggtgtcttcc
tttggtcatttgggattcgaagacaaattaattaaagcaattataaaggcggagtataca
accccaacaccaattcaagcgcaagcagtcccatgtgctttgtcgggtcgtgatgtgtta
ggaattgcacagacaggtagtggtaaaactgctgcctttctgtggccgatgctggtgcat
attaatgagcaaccgccagtacaagaaggtgagggccccatcgctttaatattggcacct
acccgcgagctggccattcaaatctacaatgaggcccgccggtttgcacggatatacgat
attcgtgttatctgcgcttacggcggcggatctaaatgggaacagagccatgctttaaaa
gagggagcggaaattgttgttgcgacccccggtcgcatcatcgatcatataaaagggggc
gcgacaaatttgcaacgggtaacattcttagtgttggatgaggcggatcgcatgttcgag
ttgggtttcgagccacaagtacgctccgtttgcaatcacgtaaggcccgacaggcagact
ttgctgtttagtgcaactttccggaaacgaatcgagaagttggcgcgcgacgccttgaaa
gacccggttaggatatcccaaggtttaaccggtcaagcatccgaagatgtaacgcaacac
gtcctgttgcttgcaaatccacaggcaaaacgaaactggttatttaatcatttggtggag
ttactatcggccggatctgtgctattgttcgtcaccaagaaattggatgctgaacaggtt
gccaatgatctgaaggtgaaggaatttgattgcttattgctgcacggtgatatggatcaa
gctgatcgaaatcgtgtcattatgacctttaagaaaaatgaatgccccttacttgttgca
acagacgtcgccgcgcgaggtttagacatacctcatgttcgaactgtaataaacttcgac
atcgcccgtgacatcgacactcacactcacagagtcgggcgtacagggcgtgcggggacc
caaggtacggcgtacacccttctaaccgacaaagacaaggagtttgcgggtcacatcgtg
agaaatcttgaggcagctcatcaagaggttccacaagaagtgctcgacttagctctacag
agctgttggtttcgaaaggcgcgatttaaacttaaggatcaaaacccgaacgtcggaggt
ttgggattgggctataaagaaaaggtgggtcgtcctcaggcgtccactcctagcactcaa
ctaatacagcctccgaaagctgggcctgcaactgacagactgtcggctatgaaagcggca
tttaaagcgcaatatagtagtcaattcactgcaagttccgaacatcctccgccaaatcaa
ccctcatcacgtaagaaaactaggtgggaataa
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