Pseudomonas poae: H045_14640
Help
Entry
H045_14640 CDS
T02456
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ppz
Pseudomonas poae
Pathway
ppz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H045_14640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppz03019
]
H045_14640
03009 Ribosome biogenesis [BR:
ppz03009
]
H045_14640
Enzymes [BR:
ppz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H045_14640
Messenger RNA biogenesis [BR:
ppz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H045_14640
Ribosome biogenesis [BR:
ppz03009
]
Prokaryotic type
rRNA processing factors
H045_14640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AGE26993
LinkDB
All DBs
Position
3354994..3358143
Genome browser
AA seq
1049 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAHTNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPVEAA
APVAAPAALPEPSLFKGLVKSLVSLFATKEEPAAPVVAEKPAAERPARNEERRNGRQQSR
NRNGRRDEERKPREERAPREERAPREERAPREAREDTPTVAREERAPREERAPRTARAPR
EDRKPRGEREERVRELREPLDASPAVAAVAAASTEERPARQPREERAPREERQPRQPREE
RQPRAEHAEASSEEEVLTGEEQLQEDGQDNAEGDRPRRRSRGQRRRSNRRERQRDANGNV
IEGSEETGENTESANNEATGNELAAGLAVTAAVASSVISAPAEAQAHEQAERATAAVEET
PAAEAPVAETAVVEAPVVEATTPIETPAVPEVEVALERDAQPQTEVVAVEPAPVVEPQPL
VEAAVEMPTVEAPVFEEAAPAVREVREVREVREEQTAFQWTAEPAAAVEAPAPVVEEAPA
PVAEVVAAEPAPVVEPTPVIEPAPVVEAPVEAEVAAPAVEAAPASALTENGRAPNDPREV
RRRRKEAEAAAAAQASKAMEEEHEPKPLV
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagatggccagcgc
ctctacgacctggacatcgaatccggtgcgcgcgagcaaaagaaggccaacatctataaa
ggccgtattactcgcatcgaacccagcctcgaggctgcctttgtcgatttcggctccgag
cgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaagcccccgaa
ggccgcgtaaacatcaaggacgtcctgagcgaaggccaggaagtcatcgttcaggtcgag
aaagaagaacgtggcaacaagggcgccgccctgaccactttcatctccctggccggccgt
tacctcgtgctgatgccgaacaacccgcgtgccggcggcatctcccgtcgcatcgaaggc
gaagaacgcaacgaactgcgtgaagcgctcaacggcctgatcgctcctgccgacatgggc
ctgatcgtgcgcaccgccggtcttggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcaactgtggaccgccatcaaagaagcctcgctggatcgctccgcgccgttc
ctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctgcgccaggac
atcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgaccttcatccgc
caggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgttccgctgttc
aaccgtttccagatcgaaagccagatcgagaccgccttccagcgcgtggtcgaactgcct
tccggcggctccatcgtgatcgacccgaccgaagccctggtgtccatcgacatcaactcg
gcgcgtgcgaccaaaggcagcgacatcgaagaaaccgccctgcagaccaacctggaagcg
gctgaagaaatcgcccgccaactgcgcctgcgtgacatcggcggcctgatcgtgatcgac
ttcatcgacatgaccccggccaagaaccagcgcgccgtggaagagaaagtccgcgagtgc
ctggaagccgatcgtgcccgcgtacaagtgggccgcatctcgcgcttcggcctgctggaa
atgtcccgtcagcgcctgcgtccatccctgggcgagagcagcggcatcgtctgcccgcgc
tgcaacggcaccggcatcatccgtgacgttgaatcgctgtccctggcgatcctgcgcctg
atcgaagaagaagccctgaaagaccgcaccgccgaagttcgcgcacaagtgccgatccct
gtggccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcacc
cgtgcccgtatcgtcatcctgccgaacgatcaccttgagacgccgcacttcgaagtgcag
cgcctgcgtgatgacagcccggaagcccacaccaaccagtccagctacgaaatcgctgcg
gctgccgctgaagtggaagaagtccagccagccgctgcgacccgcaccctggtgcgccag
gaagcggccgtcaagaccgccccggcacgcgccaatgcaccggttccggttgaagccgct
gcaccggttgccgcaccggccgccctgcctgagccaagcctgttcaagggcctggtgaag
tcgttggtcagcctgttcgccaccaaggaagagccggctgcgccggttgtggctgaaaag
ccagctgccgagcgccctgcgcgcaatgaagaacgccgtaacggccgtcagcagagccgt
aaccgcaacggccgtcgcgacgaagaacgcaaaccacgtgaagaacgtgccccgcgcgaa
gaacgcgcgccacgtgaagagcgtgctccgcgcgaagcccgtgaggacaccccgaccgta
gcccgtgaagagcgtgcaccccgcgaagagcgcgcacctcgtaccgcacgcgcaccgcgc
gaagatcgcaagccgcgtggcgagcgtgaagagcgtgtacgtgaactgcgcgagccactg
gacgcctcgccagccgttgcagccgtcgctgccgccagcaccgaagagcgcccggctcgc
cagccgcgtgaagaacgcgccccacgtgaagagcgccaaccgcgccagccgcgtgaagag
cgtcagccacgtgccgagcacgctgaagccagcagtgaagaagaagtgctgaccggcgaa
gagcaactgcaggaagatggccaggacaacgccgaaggcgatcgtccacgtcgccgctcc
cgtggccagcgtcgtcgcagcaaccgccgtgagcgtcagcgtgatgccaacggcaatgtg
atcgaaggctcggaagagaccggcgaaaacaccgaaagcgccaataacgaagcgacaggc
aacgaactggccgcaggcctggccgttaccgctgccgtggccagttcggtcatcagtgca
ccggctgaagcccaggctcacgagcaggctgaacgtgccaccgctgctgttgaagagacc
cctgctgcagaggcgcctgtcgccgaaaccgccgtggttgaagcgccagtcgtcgaagcg
accaccccgatcgaaacccccgcggttccggaagtggaagttgcactggagcgcgacgcc
cagccgcagaccgaagtggttgccgtagagcctgcgccagtggtcgaacctcagcccctg
gttgaagcggcggttgagatgccgactgtcgaagcaccggttttcgaagaagcggccccg
gcagtgcgtgaagttcgtgaagttcgtgaagttcgtgaagaacagaccgccttccagtgg
actgccgaaccggccgctgcggttgaagcgccagccccggtagtggaagaagcgccagcc
ccggttgccgaggtcgtcgctgctgaacctgctccggtggttgaaccaaccccggtcatc
gagcctgcgccagtggttgaagcgccggtggaagctgaagtggcagcccctgcggttgaa
gctgctcctgccagcgccctgactgaaaacggccgtgcgccgaacgacccacgtgaagtg
cgtcgccgccgcaaggaagccgaggcagccgccgctgcccaggcttcaaaggcaatggaa
gaagagcacgagcctaaacctctcgtctga
DBGET
integrated database retrieval system
