Pseudomonas poae: H045_15575
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Entry
H045_15575 CDS
T02456
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ppz
Pseudomonas poae
Pathway
ppz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
H045_15575 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppz03400
]
H045_15575 (sbcB)
Enzymes [BR:
ppz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
H045_15575 (sbcB)
DNA repair and recombination proteins [BR:
ppz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
H045_15575 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
H045_15575 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H045_15575 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AGE27180
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All DBs
Position
complement(3555271..3556698)
Genome browser
AA seq
475 aa
AA seq
DB search
MTSIFWYDYETTGINPRSDRPLQVAGIRTDHDLNEIDAPVNLFCLPSDDILPHPAACAIT
GITPAILAQKGLAEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE
WQGGNSRWDLIDVVRTAYALRPEGITWPEQDGRVTLKLDRLTQANGIDHGQAHDALSDVR
ATIALARLVRKKQPKLFDWLFQLRSKQRVMDQVRLLQPMVHISGRFSAERHYLGVVLPLA
WHPRNRNALIVCDLGLDPQGLLALDAETLRQRLYTRRDELAEGELPVPLKLVHINRCPVV
APLSVLRAQDCERLQLDMDSYQARALRLTDAQDVWRDKLMAIYAEDDFAANEDPEQQLYA
GFIGDRDRRLCEQVRAAEPAQLARQQWPFDDHRLPELLFRYRARNFAETLSHEEQQRWKL
FCQQRLSDAQWGAPNTLESFNLARRELMISATSIQREVLDQWQEYVDALAQRMNL
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcgattttctggtacgactatgaaaccaccggcatcaatcctcgcagcgatcgc
cctcttcaggtcgccggtattcgtaccgatcacgacctcaacgagatagacgcgccggtc
aacctgttttgcctgccaagcgacgatatcctgcctcatccggcagcctgtgccattaca
ggcatcacgcctgcgatactggcgcaaaagggcctggccgaggccgacttcatgacccgt
gtgcacgcgcagctggcagcccccggcacctgtggcgccggttacaacaccttgcggttt
gatgatgaaatgacgcggtacagcctttaccgcaattttttcgacccttatgcgcgggaa
tggcagggcggcaacagccgctgggacttgatcgatgtggtccgcacggcctacgcgttg
cgccccgaagggatcacctggcccgaacaggacgggcgcgtcaccctcaagcttgatcgc
ctgacgcaggccaacgggattgatcatggccaggcgcacgatgcgttgtcagacgtacgc
gccacgattgcactggctcgcctggtccgtaagaaacagcccaagctgttcgactggctc
tttcaactgcgcagcaagcaacgcgtcatggaccaggtacgcctgctgcagccgatggta
catatctccgggcgcttttccgccgagcgtcactatctgggtgtggtgctgccgctggcc
tggcacccgcgcaaccgcaatgccttgatcgtgtgcgacctggggctcgatccacagggg
ctgcttgcgctggacgctgaaactttacgtcagcgtctctatacgcgccgcgacgaactg
gccgagggcgaactgcctgtgccgctcaagttggtgcatatcaaccgttgtccggtggtc
gcccctttgagtgtgctgcgtgcccaggactgtgagcggttgcagttggatatggacagt
tatcaagcacgcgcgctgcggctaactgacgcacaggatgtatggcgtgacaagttgatg
gctatttatgccgaggacgattttgccgcaaatgaagatcccgagcagcagctgtacgct
ggttttatcggcgaccgcgaccgccgcttgtgtgaacaagtcagggccgcagaacctgca
caactcgcccgtcaacagtggccctttgatgatcaccgtttaccggaattgttatttcgc
taccgcgcccgtaactttgctgaaaccttgagtcacgaggagcaacaacgctggaaactt
ttctgtcagcaacgtttgtcggacgcacaatggggcgctcccaataccctggaatcattt
aatcttgcgcgacgagagttgatgattagtgctacatcgattcagcgtgaggtgctggat
caatggcaagagtatgtcgatgctttagcgcagcggatgaatctgtag
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