Pseudomonas poae: H045_17305
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Entry
H045_17305 CDS
T02456
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppz
Pseudomonas poae
Pathway
ppz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H045_17305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppz03019
]
H045_17305
Enzymes [BR:
ppz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H045_17305
Messenger RNA biogenesis [BR:
ppz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H045_17305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGE27523
LinkDB
All DBs
Position
complement(3969150..3970487)
Genome browser
AA seq
445 aa
AA seq
DB search
MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL
QLLMMEGPKVAANSARALILCPTRELAEQVHASVAEYAQNLPLTTYAVYGGVSINPQMMK
LRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKR
QTLLFSATFSDEIRTLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFVHLMR
KGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSDVQILVA
TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAIE
MLTRQTLTRTMEPDFEPEHRVPDTDASGQVVKKPKKPKKPKASGGGGGKRNLGKWVESGD
SAPVEPSIKPVRKVPVFNTGPRKKK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgccacccttggcctgatcgaacccttgctgcgcgcccttgagacgcttggc
taccagaccccgacgccggtgcaggcgcaagccattccagcggtgctggccggccgcgac
ctgatggcagccgcccagaccggcaccggcaagaccgcagggttcgccctgccgctgttg
caactgctgatgatggaggggccgaaagtcgctgccaactcggcgcgcgcgctgatcctg
tgcccaacccgcgagctggccgagcaggttcacgccagcgttgccgagtacgcgcagaac
ctgccgctcaccacctacgcggtgtacggcggcgtgagcatcaacccgcagatgatgaag
ctgcgcaagggcgtcgacattctggtcgccacgcccggccgcctgatcgatctgttccgc
cagaacgcgctgaaactcaaccagttgcaaaccctcgtgctggatgaagccgaccgcatg
ctcgacctgggcttctccgaagagctggcgaatatctaccgcatgctgccgaaaaagcgt
cagaccctgctgttctccgcgaccttctccgatgagattcgcacgctggccgggcagatg
ctcaacgacccgctgagtatcgaggtcagcccacgcaacgtcgccgccaacaccgtcaag
cagtgggtggtgccggtggacaaaaagcgcaagccggaactgtttgtgcacctgatgcgc
aagggccgctggaagcaggtactggtgttcgccaagacccgcaacggcgtggatgcgctg
gtggacaagctgcaagggttgggcatcaacgccgacggcattcatggcgacaaaccccag
gccacgcgccagcgtgcgctggaccgcttcaagagcagcgacgtgcagatcctggtggcc
accgacgtggcggcccgtggcctggacatcgaagacttgccactggtggtcaatttcgac
ctgccgatcgttgccgaagactacattcaccgcatcggccgtaccgggcgtgcgggcaat
accggggaagcgatttccctggtgtgcgccgatgaggtgaacatgctgtcagccatcgag
atgctcacgcgtcagacgctgacccgcacgatggagccggatttcgaacccgagcaccgc
gtgccggacaccgatgccagcgggcaggtggtgaagaaaccgaaaaaaccgaagaagccc
aaggcttccggcggtggtggtggcaagcgcaatttgggcaagtgggtggagagcggagac
tcggcgccggttgagccgtcgatcaagcccgtgcgcaaggtgccggtgttcaataccggg
ccgcgcaagaagaagtga
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