Pseudomonas poae: H045_18050
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Entry
H045_18050 CDS
T02456
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppz
Pseudomonas poae
Pathway
ppz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H045_18050 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppz03021
]
H045_18050 (rpoB)
03400 DNA repair and recombination proteins [BR:
ppz03400
]
H045_18050 (rpoB)
Enzymes [BR:
ppz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H045_18050 (rpoB)
Transcription machinery [BR:
ppz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H045_18050 (rpoB)
DNA repair and recombination proteins [BR:
ppz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H045_18050 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AGE27672
LinkDB
All DBs
Position
complement(4122421..4126494)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDET
LSLELVPSRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGITSLDVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLTDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEVLDSLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELDTFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtcccgtaccttctggctatccagctggattcgtatcgtgaattcttgcag
gcgggagcgaccaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtgttgcgtggcgtaacgtacgccgtacctttg
cgggtaaaagtccgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggcgaaatcccattgatgaccgagaacggtaccttc
gttatcaacggtaccgagcgtgtaatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgcggcaagacgcacagctctggcaaactcctgtactccgcgcggatc
attccgtaccgcggttcgtggttggacttcgagttcgacccgaaagactgcgtcttcgtg
cgtatcgaccgtcgtcgcaagctgccggcctcggtactgctgcgtgcgctcggctacacc
accgaacaggtattggacgcgttctataccaccaacgtattcagcctgaaggatgaaacc
ctcagtctggagttggtgccttcgcgcctgcgtggcgagattgccgttctggacattcag
gacgagaagggcaaggtcattgttgaggctggccgtcgtattactgcgcgccacatcaac
cagatcgaaaaagccggtattacttcgctggatgtgcctctggactacgtcctgggtcgc
accaccgccaaggtcatcgttcacccggctaccggcgaaatcctggctgagtgcaacacc
gagctgaacaccgaaatcctggcaaaaatcgccaaggcccaggttgttcgcatcgagacc
ctgtacaccaacgacatcgactgcggtccgttcgtctccgacaccttgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtcctggcgagcca
cctaccaaagacgctgccgagactctgttcaacaatctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgttgtgcaaagaagacatcgttgccgtcttgaagaccctggtcgacatt
cgtaacggtaaaggcatcgtcgatgacatcgaccacttgggtaaccgtcgtgttcgctgt
gtaggcgaaatggccgaaaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggccgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggccgccgcggtgaaagagttcttcggttccagccagctctcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaaacgccgtgtttctgcactgggcccg
ggcggtctgacccgtgagcgcgccggctttgaagtgcgtgacgttcacccgacgcactac
ggtcgtgtttgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactccctg
gctgcctatgcgcgcaccaaccagtacggcttcctcgaaagcccgtaccgtgtggtgaaa
gacgctctggtcaccgacgagatcgtattcctgtccgccatcgaagaagctgatcacgtg
atcgctcaggcttcggccacgatgaacgacaagaaagtgctgaccgacgaattggtagct
gttcgtcacttgaacgagttcaccgtcaaggcgccggaagacgtcactttgatggacgta
tcgcccaagcaggtagtgtcggttgctgcgtcgctgatcccgttcctggagcacgatgac
gccaaccgtgcgttgatgggttccaacatgcagcgtcaggctgtacccaccctgcgtgcc
gacaagccgctggtaggtaccggcatggagcgtaacgtagcccgtgactccggcgtgtgc
gtcgtggctcgtcgtggcggcgtgatcgactccgttgatgccagccgtatcgtggttcgt
gttgccgatgacgaagttgaaactggcgaagccggtgtcgacatctacaacctcaccaaa
tacacccgctcgaaccagaacacctgcatcaaccagcgtccgctggtgcgtaagggtgac
cgcgttcagcgcagcgacatcatggccgacggcccgtccaccgacatgggtgagctggct
ctgggtcagaacatgcgtatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagaccgctttaccacgatccacattcaggaa
ctgacctgtgtggcgcgtgataccaagcttgggccagaggaaatcactgcagacatcccg
aacgtgggtgaggctgcactgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagttggcgcaggcgacatcctggtaggtaaggtcactccgaaaggcgagacccagctg
actccggaagagaaactgctgcgtgccatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgtgtacctaccggtaccaagggtactgtcatcgacgtgcaagtcttcacc
cgtgacggcgtcgagcgtgatgctcgtgcactgtccatcgagaagacccagctcgacgag
atccgcaaggacctgaacgaagagttccgtatcgttgagggcgcgaccttcgaacgtctg
cgctccgctctggtaggccacaaggctgaaggcggcgcgggcctgaagaaaggtcaggac
atcaccgacgaagttctcgacagtcttgagcacggccagtggttcaaactgcgcatggct
gaagacgctctgaacgagcagctcgagaaggcccaggcctacatcgttgatcgtcgccgt
ctgctggacgacaagttcgaagacaaaaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtcgtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggccaaaggt
ctgggtgagaagatcaaccgtatgatcgaagagcagcgcaaggtcgcagacctgcgcaag
ttcctgcacgagatctacaacgagatcggcggtcgcaacgaagagctggacaccttctcc
gaccaggaaatcctggacctggcgaagaacctgcgcggcggcgttccaatggctaccccg
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgccg
gaaagcggccagatgcagctgttcgacggccgtaccggcaacaagtttgagcgcccggtt
actgttggctatatgtacatgctgaagctgaaccacttggtagacgataagatgcacgct
cgttctaccggttcttacagcctggttacccagcagccgctgggtggtaaggctcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgccgcatac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggtcgtaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
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