Pseudarthrobacter quantipunctorum: WHH00_04530
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Entry
WHH00_04530 CDS
T10898
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pqa Pseudarthrobacter quantipunctorum
Pathway
pqa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pqa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WHH00_04530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pqa03019
]
WHH00_04530
03009 Ribosome biogenesis [BR:
pqa03009
]
WHH00_04530
Enzymes [BR:
pqa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WHH00_04530
Messenger RNA biogenesis [BR:
pqa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WHH00_04530
Ribosome biogenesis [BR:
pqa03009
]
Prokaryotic type
rRNA helicases
WHH00_04530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WXK94079
LinkDB
All DBs
Position
992278..994413
Genome browser
AA seq
711 aa
AA seq
DB search
MPENHNDASAEAATTSIEFTEPAAPAAEAAPAPAEAAPAAKVEEAPAAPAAKVEEAPAAR
AEEDEEEGIKFADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKT
AAFAVPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYG
GSAYGPQLAGLRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVE
QIFQQTPSDRQVALFSATMPSQIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPH
KLDAMTRILEVEEFDGVIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDAL
KEGRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTP
REKYLLRSIEKATRQPVEQMHLPTAETVNTLRLGKFAEKITETLASEDVAPFRDLIASYE
EEHNVPAAEIAAALAVMAQGGQPLLVKELPAAPEFQKRERSKDGFGSRGPTRALTEGNAT
YRIAVGRRQRVMPGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRALSRT
RIGGELIHLELDNGRKPSGDRGSYQGSRGGDRGGNFKGNGGFKKEFRKNDGERSSADRGG
RSYSERSFSADSGANRGQASDSRFGGHGDGSRKPRHGNEGGQRDFNRKGKW
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaaatcacaacgacgcctccgctgaagcagcaactaccagcatcgaattcacc
gagcccgctgcccccgcagccgaggccgcaccggcacccgccgaagcagctcccgccgca
aaggttgaggaagcgcctgcagctcccgccgccaaggttgaagaagctcccgccgccagg
gctgaggaagacgaagaagaaggcatcaagttcgccgacctcggcatcgacggccgcgtc
ctcgccgccctgcaggatgtcggctacgaaaagccttcccccatccaggcagcaaccatc
ccgctgctgctcgaaggccgcgacgtcgtgggcctcgcacagaccggcaccggtaagact
gcagcattcgcagtaccggcactgtcccgcctggccgagctccacgacctcaacggcccc
tcccgcaagacccaggccctggttctggctcccacccgcgagctggccctccaggttgcc
gaggccttcacctcgtacgccaagcacatcgacgacttcacagtcctccccgtttacggc
ggctccgcctacggcccccagctcgccggcctgcgccgcggagcccaggttgtcgtcggt
acccccggccgcgtgatcgaccacatctccaagggttccctggacctgtccgagctgcag
tacctggtcctggacgaggccgacgagatgctgcgcatgggcttcgccgaagacgtggag
cagatcttccagcagaccccgtcggaccgccaggttgcgcttttctctgccaccatgccg
agccagatccgccgcatgtccaagcagtacctgaacaacccggccgagatctccgtcaag
tccaagaccaccaccggcgccaacacccgccagcggtacctgcaggtcatgggcccgcac
aagctcgatgccatgacccgcatcctcgaggttgaagagttcgacggcgtcattgccttc
gtgcgcaccaagatggccaccgaggacctggctgacaagctgaagtcccgcggtttccag
gccgccgccatcaacggtgacatcccgcagcagcagcgtgagcgcactgtggacgcactg
aaggaaggccgcatcgacatcctcgtggccaccgacgtcgcggcccgtggccttgacgtg
gagcgcatcagccacgtcatcaactacgacatcccgcacgacaccgagtcctacgtgcac
cgcatcggccgcaccggccgtgcaggccgctcgggcgacgccatcctgttcatgacgccg
cgcgagaagtacctgctgcgttccatcgagaaggccacccgccagccggtggagcagatg
cacctgcccacggccgagaccgtgaacacgctgcgcctgggcaagttcgccgagaagatc
accgagaccctggcctccgaggacgttgccccgttccgcgacctgatcgcctcctacgag
gaagagcacaacgtgccggcggcagagatcgccgcagcccttgccgtgatggcgcagggc
gggcagccgctgctggtcaaggaactgcctgcagctcccgagttccagaagcgcgagcgc
tccaaggacggcttcggctcccgtggccccacccgcgcgctcaccgagggcaacgctacc
taccggatcgccgtcggacgccgccagcgcgtcatgccgggctccatcgtgggtgccatt
gccaacgagggcggtatttcctcggcccagatcggcggcatcgacatccgttcggaccac
tccctggtggagctcccggcggacctgagccccgagcagctgcgcgccctgtcccgcacc
cggatcggcggcgagctgatccacctcgagctggacaacggccgcaagccgtccggcgac
cgcggctcctaccagggcagccgcggcggtgaccggggaggcaacttcaagggcaacggc
gggttcaagaaggaattccgcaagaacgacggcgagcgctcctccgctgaccgcggcggc
cgctcctacagcgagcgttccttcagcgccgacagcggtgccaaccgcggccaggccagc
gactcccgcttcggcggccacggagacggctcccgcaagccccgccacggcaacgagggc
ggccagcgggacttcaaccgcaagggcaagtggtaa
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