Pseudarthrobacter quantipunctorum: WHH00_04955
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Entry
WHH00_04955 CDS
T10898
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pqa Pseudarthrobacter quantipunctorum
Pathway
pqa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pqa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WHH00_04955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pqa03021
]
WHH00_04955
03400 DNA repair and recombination proteins [BR:
pqa03400
]
WHH00_04955
Enzymes [BR:
pqa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WHH00_04955
Transcription machinery [BR:
pqa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WHH00_04955
DNA repair and recombination proteins [BR:
pqa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WHH00_04955
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
DUF4407
PMD1-like
Motif
Other DBs
NCBI-ProteinID:
WXK94158
UniProt:
A0ABZ2RFD0
LinkDB
All DBs
Position
1088124..1092023
Genome browser
AA seq
1299 aa
AA seq
DB search
MSSESSFGLMQIGLATAEDIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPSRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEAARHEELPNLQVEHDIEKKQLIDNRDSDIAAIARDLEGE
IARLEGEGAKAADKKKARDSADRQMANVRKRADADIERLEQVWDRFKNLKVADLEGDEGL
YRELRDRYGMYFEGSMGAEAIKKRLESFDMQAESDLLRDIIANGKGQRKTRALKRLKVVN
AFLTTNNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEIITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSNNILKPSDGRPVTLPSQDMIIGLYHLTTKRKGSAGEGR
IFGSVSEAIMAFDARELHLNSQVKIRLEGFVPYAGWEAPEGWEQGQPALVQTSLGQVLFN
ETLPEDYPWVEAVADKGELSRIVNDLAERYPKVVTAATLDNLKDAGFYWATRSGVTVAIS
DIEVPAAKPEILAGYEERAAKIQGQYDKGLIDDDERRQELIEIWNKATNEIAQVMRDSLS
PMNTINRMVSSGARGNWMQVRQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVREEDCGTERGLVTPIAVADSNGELVLDE
NVENSAYARTLAVDVVDSEGKVLAAAGTDCGDVVIDELFKAGITEVKVRSVLTCESSVGT
CALCYGRSLATGKTVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAVSASGGDDITQGLP
RIQELFEARTPKGVAPIAEAAGRITIEESERQMRLVITPDDGTEEIAYPVLRRSRLLIED
GDHVTVGQKLINGPVDPKQVLRIMGPRAAQKFLVDEVQGVYRSQGIGIHDKHVEVIVRQM
LRRVTVIESGESDLLPGELAERSRFEDANRRVVSEGKTPASGRPELMGITKASLATESWL
SAASFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLPRYTEVTVEPTEEAKAN
LFTGPSAFSDFSYDTLGGDGAPEFHAIPLDDYDLGNDFR
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcgaatcctccttcggcctcatgcagatcggcctcgccaccgcggaagacatc
cgcggctggtcgtacggcgaggttaagaagccggaaaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggcccgtcacgggactgggaatgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatttgtgagcgttgtggcgtt
gaggtcacccgcgcaaaggtccgccgtgagcgcatgggccacatcgaactggccgctccc
gtcacgcacatctggtacttcaagggtgttccctcacgtctgggctacctccttgacctg
gcaccgaaggacctcgaaaaggtcatctacttcgctgcctacatgatcaccagcgtcgac
gaagctgcccgccacgaggaactgcccaacctgcaggttgagcacgacatcgagaagaag
cagctgatcgacaaccgcgactccgacatcgcggcgatcgcccgcgacctcgaaggcgaa
attgcccgccttgagggcgaaggcgcgaaggctgccgacaagaagaaggcccgcgactcc
gcggaccgccagatggccaacgtgcgcaagcgtgccgacgccgacatcgagcgcctcgag
caggtctgggaccggttcaaaaacctcaaggtcgccgacctcgaaggtgacgaaggcctg
taccgcgagctgcgcgaccgctacggcatgtacttcgaaggctccatgggtgccgaagcc
atcaagaagcgtcttgagagcttcgacatgcaggccgagtcggacctgctacgcgacatc
atcgccaacggcaagggccagcgcaagacccgtgccctcaagcgcctgaaggtggtcaac
gcgttcctgaccaccaacaacagcccgcttggcatggtcctcgacgccgtcccggtgatc
ccgccggaactgcgccccatggtccagctggacggtggacgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgcctgcttgacctg
ggtgctccggagatcatcgtcaacaacgagaagcgcatgcttcaggaagctgttgacagc
ctcttcgacaacggccgccgcggccgtccggtcaccggaccaggcaaccgtccgctgaag
tccctgagcgacatgctcaagggcaagcagggccgtttccgccagaacctcctcggcaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgtggcctgcccaagcagatggccctggagctcttcaagccgttcgtgatgaagcgcctg
gttgacctcaaccacgcccagaacatcaagtcggccaagcgcatggttgagcgttaccgt
ccgcaggtctgggatgtgctggaagagatcatcaccgaacacccggtgctgctcaaccgt
gcacctaccctgcaccgcctgggcatccaggcgttcgagccgcagcttgttgaaggcaag
gccatccagctccacccgctggtttgtggcgccttcaacgctgacttcgacggcgaccag
atggcagtccacctgccgctgagccctgaagcccaggctgaggcccgcatcctgatgctg
tcctcgaacaacatcctgaagccctctgacggacgtccggtcaccctgccctcgcaggat
atgatcatcggcctctaccacctgaccaccaagcgcaagggttcagccggcgaaggccgc
atcttcggttcggtctcggaagccatcatggcgttcgacgcccgcgagctgcacctgaac
tcgcaggtcaagatccgcctcgaaggcttcgtgccgtacgccggctgggaagctccggaa
ggctgggagcagggtcagcccgcgctcgtccagacctccctgggccaggtcctcttcaac
gagaccctgcccgaggactacccctgggttgaagctgttgccgacaagggcgaactgtcc
cgcatcgtcaacgacctcgccgagcgctacccgaaggttgtcaccgcggcaacgctggac
aacctgaaagatgccggtttctactgggccacccgttcaggcgtcaccgtggccatctcc
gacatcgaggttccggctgccaagccggagatccttgccgggtacgaggagcgggccgcc
aagatccagggccagtacgacaagggtctgatcgacgacgacgagcgtcgccaggaactg
attgagatctggaacaaggcaaccaacgagatcgcccaggtgatgcgcgacagcctgtct
ccgatgaacaccatcaaccgcatggtgtcctccggtgcacgtggtaactggatgcaggtc
cgccagatcgcgggtatccgtggcctggtggccaacccgaagggtgaaattattccccgt
cccatcaagtcctcctaccgtgagggcctgtcggttctggaatacttcatcgccacgcac
ggtgcccgtaagggtcttgctgacaccgcgctgcgtaccgccaactcgggttacctgacc
cgccgcctggtggatgtctcccaggatgttatcgtccgcgaagaggactgcggcacggag
cgtggcctggtcacgcccatcgccgtcgccgattccaacggtgagctggtcctggacgag
aacgtcgagaacagtgcatacgcacgtaccctcgccgtcgacgtcgtggactccgagggc
aaggtcctcgcagccgccggcaccgactgcggtgacgtggttatcgacgagctgttcaag
gcaggcatcaccgaggtcaaggtccgctccgtactcacctgtgagtccagcgtcggtacc
tgtgcactgtgctacggccgctcgctggccaccggcaagaccgtggacatcggcgaggcc
gtgggcattatcgccgcacagtccatcggtgagcccggtacccagctgaccatgcgtacg
ttccacaccggtggtgctgtttccgccagcggtggcgacgacatcacccagggtctgccc
cgtatccaggagctcttcgaagcccgtactccgaagggtgtcgcaccgattgctgaagca
gccggccgcatcaccatcgaagagtccgagcgccagatgcgcctggtcatcacccccgat
gacggaaccgaagagatcgcctacccggtcctgcgccgttcacgcctgctgatcgaggat
ggcgaccacgtcaccgtcggccagaagctgatcaacggaccggtggatcccaagcaggtc
ctgcgtatcatgggtccgcgtgcggcacagaagttcctggtggacgaagtccagggcgtg
taccgcagccagggcatcggtatccacgacaagcacgtcgaggttatcgtccgccagatg
ctgcgccgcgtcacggtcatcgagtccggcgaatcggacctgctgcccggcgagctcgcc
gagcgcagccgcttcgaggacgccaaccgccgcgttgtgtccgagggcaagactccggct
tccggacgtcctgagctcatgggcatcaccaaggcgtccctggccaccgagtcctggctg
tccgcagcttccttccaggagaccacccgcgtcctgacgcaggcggccatggaaggcaag
agcgacccgctgctcggcctcaaggagaacgtcatcatcggtaagctgatcccggccggc
acgggcctcccgcgctacaccgaggtcaccgtcgagcccactgaggaagcaaaggccaac
ctgttcaccggccccagcgcattcagtgacttctcgtacgacaccctgggtggggacgga
gctcccgagttccacgccatcccgctggatgactacgacctgggcaacgacttccggtaa
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