Pseudarthrobacter quantipunctorum: WHH00_11675
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Entry
WHH00_11675 CDS
T10898
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pqa Pseudarthrobacter quantipunctorum
Pathway
pqa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pqa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WHH00_11675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pqa03019
]
WHH00_11675
Messenger RNA biogenesis [BR:
pqa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WHH00_11675
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF459
Motif
Other DBs
NCBI-ProteinID:
WXK91752
UniProt:
A0ABZ2QZZ5
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Position
complement(2576790..2578481)
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AA seq
563 aa
AA seq
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MTQTALTGLVTPPRLPQGTLRIVPLGGLGEIGRNMAVFEIDGKLLIVDCGVLFPEETQPG
VDLILPDFSYIEDRLDDVVAVVLTHGHEDHIGAVPYLLRRRNDIPLVGSQLTLALIEAKL
QEHRIRPYTLTVEEGQVEKFGPFECEFVAVNHSIPDALAVFIRTAGGTVLHTGDFKMDQL
PLDGRITDLRHFAKLGEEGVDLFMSDSTNADVPGFTTAEKEIGPTLERLFGQATKRIIVA
SFSSHVHRVQQVLDAAAKHNRKVAFVGRSMVRNMAIAEKLGYLDVPAGLIVDIKNIDNLP
DNRVVLMSTGSQGEPMAALSRMANGDHRVVVGDGDTVILASSLIPGNENAVFRIINGLLK
LGADVIHKGNAKVHVSGHAAAGELLYCYNILEPLNAMPVHGETRHLIANGKIAIESGVPE
ASVILADNGTVIDLKDHRADVVGQVEVGFIYVDGSSVGEITDADLKDRRILGDEGFISII
TVIHRATGKVVSGPEIHARGVAEDDSVFDDIIPKINAALEEAVLNHADHTSHQLQQVVRR
VVGTWVNRKLRRKPMIIPVVLEA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgacccaaactgcccttaccggccttgtcacccctccccgcctgccgcagggaacgctc
cggattgttccgctgggcggactgggggagatcggccggaacatggccgtgttcgagatc
gacggcaagctgctgatcgtggactgcggcgtcctcttccccgaggaaacccagcccggc
gttgacctgatcctgcccgatttctcctacatcgaggaccggctggacgacgtcgtggcc
gtggtgcttacccacggacacgaagaccacatcggagccgttccgtacctgctccggcgc
cgcaacgacatcccgcttgtgggctcccagctcaccctcgccctgatcgaggcgaaactg
caggagcaccgcatccggccttacacgctcacggttgaggaagggcaggtggagaagttc
ggccccttcgaatgtgagttcgtggccgtcaaccactccattcccgacgccctggcggtg
ttcatccggacagccggcggcactgtgctgcacaccggcgacttcaagatggaccagctt
ccgctggatggacgcatcacggacctccgccacttcgccaagctcggcgaggaaggcgtg
gacctctttatgtccgactccaccaatgcggacgtcccgggattcaccactgccgaaaag
gaaatcggccccacgctggaacgtcttttcggccaggccaccaagcgcatcattgtcgcc
tccttctcctcgcacgtgcaccgggtccagcaggtcctggacgcagccgccaagcacaac
cgcaaagtggccttcgtgggccgctccatggtccgcaacatggccattgccgaaaaactt
ggctacctggatgtcccggcgggcctcatcgtcgacatcaagaacatcgacaacttgccg
gacaaccgcgtggtgctgatgtccaccggttcccagggcgagcccatggccgccctgtcc
cggatggccaacggtgaccaccgggtggtggtgggcgacggcgacaccgtcatcctcgcc
tcgagcctcatccccggcaacgagaacgccgtcttccggatcatcaacgggctgctgaag
ctgggcgccgacgtgatccacaagggcaacgccaaggtgcacgtctccggccacgccgcg
gcgggggagctcctgtactgctacaacatcctcgagccgctgaacgccatgccggtgcac
ggtgaaacccgccacctcatcgccaacggcaagatcgccatcgagtccggcgttcccgaa
gcaagcgtcatcctcgccgacaacggcacggtcatcgacctcaaggaccaccgggctgac
gtggtgggacaggtggaagtcggcttcatctacgtggacggctccagcgtgggcgagatc
accgacgccgacctcaaggaccgccggatcctcggtgacgaagggttcatctccatcatc
acggtcatccaccgggccaccggcaaggtggtgtccgggccggagatccacgcccgcggc
gtggcagaagatgattccgtcttcgacgacatcatccccaagatcaacgccgcgctggag
gaagccgtcctcaaccacgcggaccacaccagccaccagctccagcaggtggtccgccgc
gtggtgggcacctgggtcaaccgcaagctgcgccgcaagcccatgatcattcccgtggtg
ctcgaggcctaa
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