Pseudarthrobacter quantipunctorum: WHH00_12600
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Entry
WHH00_12600 CDS
T10898
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pqa Pseudarthrobacter quantipunctorum
Pathway
pqa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pqa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WHH00_12600 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pqa03400
]
WHH00_12600 (mfd)
Enzymes [BR:
pqa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WHH00_12600 (mfd)
DNA repair and recombination proteins [BR:
pqa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WHH00_12600 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
WXK91924
LinkDB
All DBs
Position
complement(2782006..2785677)
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AA seq
1223 aa
AA seq
DB search
MSLPGPSNHGPSLDGLRRALAADQTFARVRAEAARGFAVRGQDYQISAPAGLRAVLLAEM
ADGIAAAGAGDDAGGPGVVLAVTATGREAEDLTAALRAYLPADCVAEFPSWETLPHERLS
PRSDTVGRRLSVLRRLAHPETSTAGPLRIVVAPVRAVVQPVVASLGELVPVTLKVGQERP
FTEVVRSLSDAAYARVDMVTHRGEFAVRGGIIDVFPPTEDHPIRVEFFGDEVDQMRWFAV
ADQRSLSSPGLHHPSELHAPPCREILITPSVMSRAATLKAQLPAAADMLEKIAGGIAVEG
MESLAPVLVDSMVPFVEQLPAGSISVVIEPEKVRTRAHDLAATNEEFLEAAWSTASDGGT
APLDLSSQASAALHSASFRSLTETRSSSLEHGVSWWSITSLAQDEELLPDIDVLNLHARE
PRGYQGDVAEMMDFIGSHVRDQWRIVVATEGPGPAQRLAELFHENDIPCARVDNLDHEPQ
AGIIEVTTAAVGRGFVLDGLKLGLLTEADLLGRTSAGSTKDMRRMPSKRRNAVDPLQLVA
GDHVVHEQHGIGKFVELIQRKVAGGGDGVREYLVLEYAPSKRGAPGDRLFVPTDQLDQVT
RYVGGDTPVLSKMGGADWASTKSKARKAVKEIAGELIRLYSARMASRGHAFGPDTPWQRE
LEEAFPYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQV
AVLVPTTLLAQQHYETFTERFSGFPLRVKPLSRFQASKEAKETAEGVKNGTVDVVIGTHR
LLSKDFEFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRE
TSTLATPPEERHPVLTYVGPYTDKQTSAAIRRELMREGQVFFVHNRVSTIERTAAKIREL
VPEARVEVAHGKMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDGADKYG
LSQLHQLRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVATHNELGAGMQLAMKDLEI
RGAGNLLGGEQSGHIQGVGFDLYIRLVGEAVADFRGEAEEKAAEMKIELPVNAHLPHDYV
PGERLRLEAYRKLAAALTNEAIDEVLAELVDRYGEPPLPAQNLVSVARFRVGAREAGLSD
VALQGNFIKFSPATLPESKVMRLNRMYPGSQSKPALDAVLIPKPKTARIGGRDLQDAEIL
EWANGVIRNIFSDAPLAAPAVSG
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgagccttcccggcccgtccaatcacggcccgtcgctggacggtctgcgccgcgcactt
gccgcggaccagaccttcgcgcgcgtccgcgccgaggctgcccgcgggttcgcggtccgc
ggccaggactaccagatcagtgcgcccgccgggctgcgggcggtgcttcttgctgagatg
gcggacggcattgccgccgccggcgcaggggacgacgccggcgggccgggtgtggttctt
gccgtcaccgcaacgggccgggaggctgaggacctgacggccgcgctgcgggcatacctg
ccggccgactgcgtggctgagtttcccagctgggagaccctgccccacgagcgcctctcg
ccccggtcggacaccgtaggccggcgcctctcggtgctgcgccgcctggcgcatccggaa
acgtcgacggcgggcccgctccggattgtggtggctcccgtgcgcgccgtggtccagccg
gtggttgcaagcctgggtgagctcgtcccggtcaccttgaaggtgggccaggaacggccc
ttcaccgaggttgtccggagcctctccgacgcagcctacgcccgggtggacatggtgacg
caccgcggtgaatttgccgtccgcggcgggatcatcgacgtctttccgcccactgaggac
caccccatccgggtggagttctttggtgacgaagtggaccagatgcgctggttcgccgtg
gcagaccagcgctcgctgtcctcgcccgggctgcaccaccccagcgagctgcacgcgccg
ccttgccgggaaatcctcatcaccccgtccgtgatgtcccgggcagcgaccctcaaggca
cagctcccggccgcggccgacatgcttgaaaaaatcgccggtgggatcgccgttgagggc
atggagtccctggcgccggtgctggtggactccatggtcccgttcgtggagcagttgccg
gcaggctccatctcggtggtcatcgaaccggaaaaggtccgcacccgtgcccatgacctc
gcggccaccaacgaggagttcctggaggcggcatggtccacggcgtccgacggcgggacg
gcacctttggatctgagctcccaagccagtgccgcgcttcactccgccagcttccggtcg
ctcacggaaacgcgcagctcctccctggagcacggggtgtcctggtggtccatcacctcc
ctggcgcaggacgaggaactgctccccgacatcgacgtcctcaacctgcatgcgcgggaa
ccgaggggctaccagggcgatgtggccgagatgatggacttcatcggctcccacgtccgg
gaccagtggcggatcgtcgtcgccaccgagggtcccggtcctgcccagcgcctggcggag
ctgttccacgagaacgacattccctgcgcgagggtggacaacctggaccacgagccccag
gcgggcatcatcgaggtgactactgccgccgtcggacgcggttttgtcctggacgggctc
aagctgggcctcctcaccgaagctgacctgctgggccggacctccgccggctcaacgaag
gacatgcggcggatgccgtccaagcggcgcaacgccgtggacccgctgcagctcgtggcc
ggtgaccacgtggtccacgaacagcatggcatcggcaagttcgtggaactgatccagaga
aaggtcgccgggggcggtgacggggtgcgcgagtatctggtcctcgagtacgctccgtcc
aagcgcggcgcgccgggggacaggctattcgttcccacggaccagctggaccaggtgacc
cgttacgtcggcggggatactcccgtgctgagcaagatgggcggcgcggactgggccagc
accaaatccaaggcacgcaaagccgtcaaggagattgccggtgagctgatcaggctctac
tctgcccggatggcgtcccggggccatgccttcggcccggacaccccctggcagcgcgag
ctcgaagaagccttcccctatgtggagaccccggaccagctgaccaccatcaacgaggtg
aaagcggacatggagcgcgagatccccatggaccggctggtctccggcgacgtgggctac
ggcaagaccgagatcgccgtgcgcgccgccttcaaggcagtgcaggacggcaagcaggtg
gccgtcctcgtgcccaccacgctgctggcccagcagcactacgagacgttcaccgagcgg
ttctccggcttccccctgcgcgtgaagccgctgtcccgtttccaggcgtccaaggaagcc
aaggagacggcggagggcgtcaagaacgggaccgtggacgtggtgatcggaacacaccgg
ctgctgtccaaggactttgagttcaaggacctggggctggtgatcgtggacgaggaacag
cgcttcggggtggagcacaaggaagcgctcaagaagatgcgcaccaacgtggacgtgctc
gccatgagcgcaacccccatcccgcgcacgctggagatgtcgctgaccggcatccgggaa
acctccaccctggccacgccgccggaggaacggcacccggtcctgacgtatgttggcccc
tacacggacaagcagacctccgccgccatccggcgcgagctgatgcgtgaaggacaggtt
ttcttcgtccacaaccgggtgtccaccattgaacggacggctgcaaagatccgcgaactg
gtgcccgaggcccgcgtggaggtggcgcacggcaagatgtccgagagccgtctggaacag
atcatcgtggacttctgggagaagcgctttgacgtcctggtgtgcaccaccatcatcgaa
accgggctggacatctccaacgccaacaccctgatcgtggacggcgcggacaagtacggc
ctgtcccagctgcaccagctccgcgggcgcgtgggccgcggccgtgaacgcgcctacgcg
tacttcctctacccgtccgagaagccgctgggtgaggtggcactggaacggctcaaggcc
gtggccacgcacaatgagctgggcgcgggcatgcagctggccatgaaggacctggagatc
cgtggtgccggcaacctgctgggcggcgagcagtccggccacatccagggcgtcggattc
gatctgtacatccgcctggtgggtgaggccgtggctgacttccgcggcgaggccgaggaa
aaggccgcggagatgaagatcgagctgcccgtcaacgcccatcttccgcacgactatgtg
ccgggggagcggctgcgcctggaggcctaccggaagctcgccgctgcgctcaccaacgag
gccatcgacgaagtcctggccgaactggtggaccggtacggagagccgccgctaccggcc
cagaaccttgtgtccgtggcgcgcttccgggtgggggcccgtgaagccggcctgtccgat
gtggccctgcagggcaacttcatcaagttctcgccggccaccctgccggaatccaaggtc
atgcggctgaaccggatgtacccggggtcccagtccaagccggcgctcgatgccgtgctg
atccccaagcccaagacggcaaggatcggcgggcgggacctgcaggacgcggaaatcctg
gaatgggccaacggcgtgatccggaatatcttctccgacgcgccgctcgccgctccggca
gtcagcggataa
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