Pseudomonas quebecensis: OSC50_04320
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Entry
OSC50_04320 CDS
T10532
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pqe Pseudomonas quebecensis
Pathway
pqe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pqe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
OSC50_04320 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pqe03400
]
OSC50_04320 (sbcB)
Enzymes [BR:
pqe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
OSC50_04320 (sbcB)
DNA repair and recombination proteins [BR:
pqe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
OSC50_04320 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
OSC50_04320 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OSC50_04320 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
UZW19584
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All DBs
Position
917771..919198
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AA seq
475 aa
AA seq
DB search
MTSIFWYDYETTGINPRSDRPLQVAGIRTDLELNEIGTPVNLYCQPADDILPHPAACAIT
GITPATLAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE
WQGGNSRWDLIDVVRTAYALRPQGIQWPQQDGRVTLKLERLTAANGIDHGQAHDALSDVR
ATIALARLVREKQPKLYEWLFQLRSKQRVMDQVRLLQPMVHISGRFSAERHYLGVVLPLA
WHPRNRNALIVCDLGLDPQGLLDTDAETLRRRLYTRRDDLADGELAVPLKLVHINRCPVV
APLNVLRAEDRERLHLDMALLQARALRLTDAQQVWRDKLAIIYAEEDFAASVDPEQQLYD
GFIGDRDRRLCEQVRLAEPAQLARQQWPFDDERLPELLFRYRARNFPDTLNSEELQRWKL
FCQQRLSDPQWGAPNTFESFKQARQELTLSATPFQLQVLAHWQDYVDALATRMTL
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgacctccattttctggtacgactatgaaacgaccggcatcaacccgcgcagcgatcgc
cctcttcaggtagctggcattcgtaccgatctcgaactcaacgaaatcggcaccccggtc
aacctctactgccagcctgccgacgatatcctgcctcaccccgccgcctgtgcgattacc
ggcatcaccccggcgaccctggccgaaaaaggcctggccgaagccgatttcatgacgcgc
gtgcatgccgagctggcggcccctggcacgtgcggcgccggctacaacacgctgcgattc
gatgacgaaatgacgcgctacagtttgtatcgcaatttttttgacccgtacgcccgagag
tggcaaggcggcaacagccgttgggacctgattgatgtggtacgcaccgcttacgcgctg
cgcccgcagggtatccagtggccgcagcaggacgggcgcgtcacgctcaagctggaacgc
ctgacagcggccaatggtatcgaccatggccaggcccacgatgcattgtccgatgtgcgc
gcgacaattgccctggcccggttggttcgcgagaaacagcccaagctctacgagtggctg
tttcaactgcgcagcaaacagcgggtaatggaccaggtgcgcctgctgcaacccatggtg
catatctccgggcgtttttccgccgaacgccattacctgggcgttgtactgccgctggcc
tggcacccgcgcaaccgcaatgcgctgattgtctgcgaccttgggctggacccgcagggc
ttgcttgacacagatgccgagaccttgcgccggcgcctctatacacgccgcgatgacttg
gctgacggggagctggcggtgccgctcaagctggtgcatatcaaccgctgcccggtggtt
gcgcccttgaacgtgctgagggccgaagaccgtgagcgcctgcatttggacatggcgctg
ttgcaggcgcgggcgctgcggctaactgacgcacagcaagtgtggcgcgataagttggcc
atcatttatgccgaggaagattttgcagcgagtgtggaccccgaacagcagctctatgac
ggctttatcggcgaccgtgatagacgcttgtgcgaacaagtccgcttggcggaacctgcg
caattagcacgccagcagtggccttttgatgatgaacgtttacctgaactattgtttcgc
taccgtgcacgtaacttccccgatacgttgaacagcgaggagctacaacgctggaaactt
ttctgtcagcaacgtttgtcggaccctcaatggggtgcaccgaatacctttgaatcattt
aagcaggcccggcaggaattaacgcttagtgcgacaccgtttcagctgcaggtactggca
cactggcaggactatgttgacgctttagcgacgcgtatgaccctgtaa
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