Pseudomonas quebecensis: OSC50_06335
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Entry
OSC50_06335 CDS
T10532
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pqe Pseudomonas quebecensis
Brite
Enzymes [BR:
pqe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OSC50_06335 (hrpA)
Messenger RNA biogenesis [BR:
pqe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OSC50_06335 (hrpA)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UZW19962
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Position
1336062..1339973
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AA seq
1303 aa
AA seq
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MTEQAPTIDQLLKNLDHAMLADRHRLRRQLLELRKKPDEEKLAQWVARMQASCAQVTARR
ASLPLIRYDDSLPIAAKRDEIKAALQAHQVLIIAGETGSGKTTQLPKICLEIGRGQYGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDANTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS
EEDFIGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDPDSDFAGLVNLWRGFEEQRQELTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLSLNKEPADYPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWIHPSSG
IGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHYGPVDPVVSRQLFIREGLVRGEIQSRAKCLSANQRLLEQLDEL
EAKARRRDILADEETLYAFYDARLPAEIHQTATFDSWYRINSQKDPQLLIMREEDVLARE
ASEVTAAHYPDTLHLGDLALALSYHFEPNHPRDGVTLRVPAPLLPALPAERLEWLVPGMI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRIEFGQGSLPQALGRELLRMTGARVSDEA
WAEAAQQVESHLKMNLEVVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVE
AKVFAAVAEKTQQNIAGLSMTVYPALVEENGTVKEGRFSTAAEAEFQHRRALQRLLMQQL
AEPAKFLRGKLPGLTELGLMYRELGRVDALVEDILLASLDTCVLEGETSLPRDGAGLAAL
ADRKRGGWTEHAERLARLTLEVLKLWHGLQKRFKGKIDLAQAVALNDIKQQLSNLVYPGF
VRETPAQWFKELPRYLKAIELRLEKLPSQVQKDRVWSGELSGLWMQYQNRLNKHTQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSLVEA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacaagcgcccactatcgaccaactgctcaaaaacctcgatcacgccatgctc
gccgaccgtcaccgcttgcgtcggcaactgcttgagttgcgcaagaaacccgacgaggaa
aagttggcgcagtgggtcgcgcgcatgcaggcatcctgtgcccaggtgacggcgcggcgc
gccagcctgccgctgatccgctatgacgacagcctgccgattgccgccaagcgcgatgag
atcaaggccgcgctgcaagcgcatcaagtgctgatcatcgccggcgaaaccggttcgggt
aagaccacccagttgccgaagatctgcctggagatcggtcgcggccagtacggtttgatc
ggccacacccagcctcgccggatcgctgcgcgcagcgtggccagccgcgttgccgaagaa
ctggccacgcccctgggcgcgctggtcggttaccaggtgcgtttcgaagaccagagcgac
gccaacacgctgatcaaactgatgaccgacggcatcctgctggcggaaacccagaacgac
cgctacctggaacgctatgacacgatcatcgtcgacgaagcccacgaacgcagcctgaac
atcgacttcctgctcggctacctcaagaccctgctgccgcgccgcccggacctgaaagtc
atcatcacctcggcgaccatcgatctggagcgcttttccaagcacttcgacgatgcgccg
attgtcgaagtgtcgggccgcacgtttccggtggagacctggtaccgcccgctgacgctg
gagcaggacgaggagggcaaccgcgtcgaggatgacctgaccgtggaccaggcgatcctc
gccaccctcgatgaaatcgccgcctatgagcgcagcgagcgccgcagccccggcgatgtc
ctggtgttcctgccgggcgagcgcgaaattcgcgacgccgccgacatgctgcgcaaggcc
caactcaagcacaccgagatcctgccgctgtacgcgcgtctgtcgcccgccgaacagcag
cggattttccagtcacatccaggtcggcgcgtggtgctggcgaccaacgtcgcggaaact
tcgctgaccgtaccgggcattcgctatgtgatcgacagcggcaccgcgcgcatcagccgc
tatagctaccgcgccaaggtgcagcgcctgccgatcgaggcgatttcccaggccagcgcc
aaccagcgtaaaggtcgctgcggccgggtcgagccgggtatctgtgtgcggttgtacagc
gaagaggactttatcggtcgcccggaatttaccgacccggagatcctgcgtaccaacctc
gccgccgtgatcctgcagatgctgcacctgcgcctgggcgaaatcaccgacttcccattt
atcgaaccgccggacggcaaggccatcagcgacggtttcaacctgctgcaggaattgtcg
gcggtggaccgcaacagccagctcacgccgctcggccggcaattggcgcgcctgccggtg
gacccgcgcatggggcgtatgttgctggaagcggccaagcttggcagcctgcaggaagtg
ctgatcgtggccagcgccatgtcgatccaggacccgcgcgagcggccgccggagcgccag
caggccgccgaccaggcccacgcgcagtggaaggatccggactcggacttcgccggattg
gtgaatctgtggcgcggttttgaagagcagcgccaggagctgacagccagcccgctgcgt
aactggtgtcgcaagaacttcctcaactacctgcgcctgcgcgaatggcgcgattctcat
cgccagttgagtctgatttgccgcgacatgcagctgagccttaataaagaaccggcggac
taccccaaactgcacaaggccgtgctgtccggcctgctcagccagatcggccagaaaacc
gaggacggcgattacctgggcgcgcgtcagcgacgcttctggattcacccgtcctcgggc
atcggcaaaaagcgcccgcagtggctgatgaccgccgaattggtggaaaccaccaagctg
tatgcacgcatggtggccaagatcgacgccgactggatcgagccgctggccgggcacctg
atcaagaaaaaccacttcgagccgcattgggagaagaagcgcggccaagtggtggcgttt
gagcagatcaccctgttcgggctgattgtggtcggccgccggccggtgcattacgggccg
gtcgacccggtcgtctctcggcaattgtttatccgcgaaggcctggtgcgcggtgagatt
cagtcgcgcgccaagtgcctcagcgccaaccagcgcttgctggaacagctcgacgaactg
gaagccaaggcccgccgccgcgatatcctggccgacgaagaaaccctgtacgccttctac
gatgcgcgcttgccggcggagatccaccagactgcgacctttgacagctggtacagaatc
aacagccagaaagacccgcaattgctgatcatgcgcgaagaggacgtgctggcccgcgag
gccagtgaagtcaccgccgcgcattatcccgacaccctgcacctgggcgatctggcgctg
gctttgagttaccactttgaacccaatcatccgcgcgacggcgtgaccctgcgcgtgccg
gcgccgctgttgccggcgttgcccgccgaacgcctggagtggctggtgcccgggatgatc
gaagccaagtgcatcgcgctggtgcgcaacctgcccaaggccctgcgcaagaactttgtg
ccagtgccggacttcgtcaaggctgcgctgcagcgcatcgaattcggccagggctcattg
ccccaggcactggggcgcgaactgctgcgcatgaccggtgctcgggtcagcgacgaagcc
tgggccgaggcggcgcagcaggtggagagtcacctgaagatgaacctggaagtggtcgac
ggtcagggcaagttcctaggcgagggccgtgacctggccgaactgaccgcacgcttcgcc
gaagccagccaggccgcgttggccgtgccgcagaccgcgaagagccagcaacccgtggag
gccaaggtgtttgcggcggtggccgagaagacccagcaaaacatcgccgggctgtcgatg
acggtgtacccggccctggtggaagagaatggcacggtcaaggaagggcgcttctcgacc
gccgccgaggctgaattccagcaccgtcgggcgttgcagcgcctgctgatgcagcaactg
gcggaaccggccaaattcctgcgcggcaaattgcccggtcttaccgagttgggcctgatg
taccgtgaactggggcgtgtcgacgcgctggtcgaggacatcctgctggccagcctcgac
acctgtgtgttggaaggcgaaaccagcctgccgcgtgacggtgccggcctggcagcgctg
gccgaccgcaagcgcggcggctggaccgagcacgccgagcgcctggcgcgcctgaccctt
gaggtgctgaagctctggcatggcctgcaaaagcgcttcaaaggcaagatcgacctggcc
caggcggtggccttgaatgacatcaagcagcaattgagcaacctggtgtacccaggcttc
gtgcgcgaaaccccggcgcaatggttcaaggaactgccgcgctacctcaaggccatcgag
ctgcgcctggagaagctgcccagccaggtacagaaagaccgggtgtggagcggcgaactc
agcggcctgtggatgcagtaccagaaccgcctgaacaaacacacccaggaaggcaagcgc
gacccgcaacttgagctgtaccgctggtggctggaggaataccgcgtgtcactgtttgcc
cagcagcttggaaccaaggtgccgatttccgacaagcgattgagcaagcagtggagcctg
gtcgaggcctga
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