Pseudomonas quebecensis: OSC50_11480
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Entry
OSC50_11480 CDS
T10532
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pqe Pseudomonas quebecensis
Brite
KEGG Orthology (KO) [BR:
pqe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pqe03032
]
OSC50_11480
03400 DNA repair and recombination proteins [BR:
pqe03400
]
OSC50_11480
Enzymes [BR:
pqe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OSC50_11480
DNA replication proteins [BR:
pqe03032
]
Prokaryotic type
DNA Topoisomerases
OSC50_11480
DNA repair and recombination proteins [BR:
pqe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OSC50_11480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
UZW20921
LinkDB
All DBs
Position
complement(2460263..2461312)
Genome browser
AA seq
349 aa
AA seq
DB search
MPDSALPADLPRDLHYVDDTLPGIRRKKVRGKFQYFNPKGERITDADEIKRLNALAVPPA
YTDVWICADPRGHLQATGRDARGRKQYRYHTRWREVRDSDKYARLQAFGNALPKLRKQLE
AQLAEPGFTREKVLATVVMLLDATLIRVGNTQYARDNKSYGLTTLRNRHVDVKGSEIQFQ
FRGKSGVEHQVSVKDRRLAGVVKRCMELPGQNLFQYLDEDGERHTVSSHDVNAYLHSLTG
EDFTAKDYRTWAGTAMALAVLRELQWQPESDAKRHVVSMVKDVAKQLGNTPAVCRKCYIH
PAVLEHFSLGELSKLPKPRVRKGLKAEEVALAMFLERLAADLPQNAKAG
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgcccgactccgcgctgcccgccgacctgccccgcgacctgcattacgttgatgacacc
ctgcccggcatccgccgcaaaaaagtgcgcggcaaattccagtacttcaaccccaagggc
gagcgcatcaccgatgccgacgagatcaagcgtctcaacgccctggcggtgccaccggcc
tacaccgatgtatggatctgcgccgatccgcgcggtcatctgcaagccaccggccgcgat
gcccgcggacgcaagcaataccgctaccacacgcgctggcgcgaagtgcgcgacagcgac
aaatatgcgcgtctgcaggccttcggcaacgccttgccgaaactgcgcaagcaattggaa
gcgcaactggccgaacccggattcacccgcgaaaaagtcctggctaccgtggtgatgctg
ctggacgccacgctgatccgcgtcggcaatactcagtacgcgcgcgataataaatcctac
ggcctgaccacgctgcgcaaccgacatgtggacgtcaagggcagcgagattcagttccag
tttcgcggcaagagcggcgtggagcatcaggtgagcgtcaaggatcgacgcctggccggc
gtggtgaaacgctgcatggaattgccggggcagaatctgttccagtacctggacgaggac
ggtgagcgccacacggtcagttctcatgatgtgaatgcctacctgcacagcctcacgggt
gaggattttactgccaaggattatcgcacgtgggctggcaccgccatggcgctggcagtg
ctgcgcgaattgcagtggcagcccgaatccgatgccaagcggcatgtcgtgtcgatggtc
aaggatgtcgccaagcagttgggtaataccccggcggtgtgccgcaagtgctatatccac
ccggccgtacttgagcatttcagcctgggggaattgtcgaagctgcccaagccgcgggtg
cgcaagggcctgaaagccgaagaagtcgctctggcgatgttcctcgaacgcctggccgct
gacttgccgcagaacgccaaggcgggttag
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