Pseudomonas quebecensis: OSC50_16750
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Entry
OSC50_16750 CDS
T10532
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pqe Pseudomonas quebecensis
Pathway
pqe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pqe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OSC50_16750 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pqe03400
]
OSC50_16750 (mfd)
Enzymes [BR:
pqe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OSC50_16750 (mfd)
DNA repair and recombination proteins [BR:
pqe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OSC50_16750 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
UZW17029
LinkDB
All DBs
Position
3601361..3604810
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPQLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
RFLLGSSLVLDVGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVESIKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGGGRERFPAQALPDL
AIQAKATQPLEALSTFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAG
KDRLAITIAPLDEGLLLNDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPTPV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcaactccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaggctgccagcgcagccaagcgcttt
accctgctgcttaccgccgacagccaaagcgccgaacggctggagcaggagctgagcttc
ttcgcccccgatttgccggtgctgcattttcccgactgggaaaccctgccctacgatctg
ttctcgccgcaccaggacatcatctcccaacgcatcgccagcctgtaccgcctgccggaa
ctggcccacggcgtgctggtggtgccgatcaccacggcgttgcaccgcctggcgccgacc
aggttcctgttgggcagcagcctggtgctggatgtgggccagaagcttgacgtggagcag
atgcgcacgcgcctggaagccagcggctatcgctgtgtggacacggtgtacgagcacggc
gaattcgcggtacgcggcgcgctgatcgacctgtttccgatgggcagcaagttgccttat
cgcatcgatctgttcgacgacgaaatcgaaaccctgcgcaccttcgacccggaaaaccag
cgctccatcgacaaggtcgaatcgatcaagctgctgccggcgcgggaattcccgttgcaa
aaagacgcagtgacccgcttcaaggcgcgttttcgtgagcgcttcgacgtcgacttccgc
cgctgcccgatcttccaggacctgagcagcgggattacacccgccggtatcgagtactac
ctgccgctgtttttcgacgaaacctccaccctgttcgattacctgccccaggacacgcaa
gtgttctcgctgccgggcatcgaacaggcggcggaaaacttctggaacgacgtgcgcaac
cgttatgaggagcgccgcgtcgatccctcgcgtcctttattgccgcccgccgaattattc
ctgccggtggaagactgcttcgcgcgcctgaaaaactggccgcgtgtggtggccagccag
caggatgtggacgccggtggcggtcgcgaacgcttccccgcgcaagcactgcccgacctc
gcgatccaggccaaggccactcagccgctggaagcgctgtccacattccttggcgacttc
ccgggccgcgtgctgtttaccgccgaatccgccgggcgccgcgaagtgctgctggagctg
ctcgaacgcctgaaactgcgacctaaaaccgtcgacagttggccggactttgtcgcgggc
aaggatcgcctggcgatcaccatcgcaccgctcgacgaaggcctgctgttgaatgacccg
gccctggcactgattgccgagagcccgctgttcggccagcgcgtgatgcagcgtcggcgt
cgtgaaaaacgcgccgacgccaacaatgacgcggtgatcaagaacctcaccgaactgcgc
gaaggcgcgccggtggtgcatatcgaccacggtgtgggccgctatctgggcctgcagacc
ctggagatcgacaaccaggccgccgaattcctcacgatggaatatgccgaaggtgccaag
ctttacgtgccggtggccaacctgcacctgatcgcgcgctataccggcagcgacgacgcc
ttggcgccgttgcaccggttgggctccgagacctggcagaaagccaagcgcaaggccgcc
gaacaagtgcgcgatgtcgcggccgagctgctggacatctacgcccgccgcgccgcgcgt
gaaggttatgccttcgccgatccgaaggccgactatgcgaccttcagcgccggtttcgcc
tttgaagaaaccccggaccagcaaaccaccatcgaagcggtgcgcgccgatatgctcgcg
cccaaaccgatggatcgcctggtctgcggcgacgtcggcttcggcaagaccgaagtggcc
atgcgcgccgccttcatcgcagtgcacggcggcaaacaggtggcaatcctggtgcccacc
accctgctcgctcagcagcactacaacagtttccgcgaccgctttgccgattggccggtg
accgtggaagtgatgagccgtttcaagtccgccaaggaagtgaacgcggccgttgccgac
ctggccgaaggcaagatcgatatcgtgatcggcacccacaagctgctgtcggacgatgtg
aagatcaagaacctggggctggtgatcatcgatgaagaacaccgctttggtgttcggcaa
aaggaacaactcaaggctttgcgcagcgaagtcgacatcctcaccctgactgccacgccg
attccgcgcacgttgaacatggcggtgtcgggcatgcgcgacctgtccatcatcgccacc
ccaccggcgcggcgcctgtcggtgcgcactttcgtgatggagcagaataaaagcacggtc
aaggaagcgctgctgcgggaattgctgcgcggcgggcaggtgtattacctgcacaacgac
gtcaagaccatcgagaaatgcgccgccgatctcgccgaactggtacccgaggcgcggatc
gccatcggccacgggcagatgcgcgagcgcgagctcgaacaggtgatgagcgacttctat
cacaagcgcttcaatgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaaattcggcctggcgcaactgcatcag
ttgcgcggccgggtcggacgcagccatcaccaggcttacgcctacctgctcacgccgccg
cgccagcagattaccggcgacgcggaaaaacgcctggaagccatcgccaacacccaggac
ctgggcgccggctttgtgctggccaccaacgacctggaaatccgcggtgccggcgaactg
ctgggcgacggccagagcgggcagatccaggctgtaggcttcacgttgtatatggaaatg
cttgagcgcgcggtgaaagccattcgcaagggcgagcagccgaaccttgaccagcctttg
ggcggcggtccggaaatcaacctgcgcttgccggcgttgattcccgaagactacctgccg
gacgtgcacgcgcggttgatcctgtacaagcgcatcgcctcggccaccgacgaagagggc
ctcaaggacctgcaagtggagatgatcgaccgcttcggcctgctgccggaaccgaccaag
aacctggtgcgcctgaccctgctcaaactgcaggccgagcagctgggcatcaagaaggtc
gacgccgggccgcagggcgggcggatcgagttcgaagcgcagacgccggtagacccactg
gtgctgatcaagctgatccagggccagcccaaccgctataaattcgaaggggctacgctg
ttcaagttcatggtgccgatggaacgcgccgaagaacgcttcaataccctggaggcgctg
tttgagcgcctcattccgacacctgtttga
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