Pseudomonas qingdaonensis: KH389_02010
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Entry
KH389_02010 CDS
T07622
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pqi
Pseudomonas qingdaonensis
Pathway
pqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KH389_02010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pqi03019
]
KH389_02010
Enzymes [BR:
pqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KH389_02010
Messenger RNA biogenesis [BR:
pqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KH389_02010
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QVL19382
LinkDB
All DBs
Position
complement(429079..430971)
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AA seq
630 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPGGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITNLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKAGTV
RIMVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERVTRQKIQDGDLMGFDASTVEAEKPEARERPQMNPRGGRGQRADGSNAGGRKDKG
KDKGQEKDKPAGDRATEKAAGGRQERKPRDNSKTRQAPSGQAAVVPKIPADRDPEAFLDD
EVDNFGNRADYVSPYQNKGGQGRNRRPGAPAAAGTGTGAPRGGQPRSNTGGGARSGGAGS
NGEKRGGARSGGGGRDGQARRDGSNNRNRRPARDDQSSQEPAVRNPRDGQSQPKIVHKES
KIDRFPTAEQLEQLPSRPRGEKPALLTRNR
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctctagtccgcgctatcgaggcagcgggc
tatacccagcctacgccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggcgcagacaggtactggtaaaaccggtggctttgcactgccgattctc
gaacgcttgtttccaggtggccaccccgacaagtcccagcgccatggcccacgccagccg
cgggtactggtgctgacccccacccgcgaactcgccgcccaggtccacgacagcttcaag
atctacgcccgcgacctcaagttcgtcagcgcctgcatcttcggcggtgtcggcatgaac
ccgcaggtgcaggccatgtcccgcggcgtcgacgtgctggtggcctgccccggccgtctg
ctggacctcgccggccagggcagcgtcgacctgagccacgttgagatcctggtgctcgac
gaagccgaccgcatgctcgacatgggcttcatccatgacgtgaagaaggtcctcgcacgc
ttgcctgccaagcgccagaacctgctgttctcggcgaccttctcaaaagacatcaccaac
ctggccgacaagctgctgcacaaccccgagcgcatcgaggtcacgccgcccaataccacg
gtcgagcgtatcgagcagcgtgtgtaccgtctgcccgccagccacaagcgtgccctgctg
gcccacctgatcacccagggtgcctgggagcaggtgctggtcttcacacgtaccaagcac
ggcgccaaccgcctggccgagtacctcgagaagcacggcctgactgccgcggcgattcac
ggcaacaagagccagaatgcgcgcaccaaggccctggccgacttcaaggccggcaccgtg
cgcatcatggtcgccaccgacatcgccgcccgcggcctggacatcgaccagttgccccac
gtggtcaacttcgagctgcccaacgtcgaggaagactacgtgcaccgtatcggccgtacc
ggccgtgcgggccgttccggcgaggccatctcgctggtggcgccggacgaagagaagctg
ctcaagagcatcgagcgcgtcacccgccagaaaatccaggacggcgacctgatgggcttc
gatgcctcgacggtcgaagccgaaaaacccgaagcccgtgaacgtccgcagatgaacccg
cgcggtggccgtggccagcgtgccgacggcagcaatgccggcgggcgcaaggacaagggc
aaggacaaaggccaggaaaaggataagcccgcaggcgacagagccactgagaaggccgcc
ggcgggcgccaagagcgcaagccccgtgacaacagcaaaacccgccaggcaccctcgggt
caggcagcagtagttccgaaaatcccggccgaccgtgaccctgaagccttcctggacgac
gaagtggacaacttcggcaaccgtgccgactacgtcagcccgtaccagaacaagggcggc
cagggccgcaaccgtcgcccgggcgcaccggcagccgccggtaccggcaccggcgcaccc
cgcggtggccagccacgcagcaacaccggtggtggtgcacgtagcggtggcgccggcagc
aatggcgagaagcgcggtggtgcacgcagcggtggcggtggtcgcgatggccaggcgcgc
cgcgacggcagcaacaaccgcaaccgccgcccggcccgtgacgatcagtcgtcgcaggaa
ccggcagtgcgcaacccgcgtgacggccagtcgcagcccaagatcgtgcacaaggaatcc
aagatcgaccggttcccgaccgccgaacagctcgagcagctgccaagccgcccacgtggc
gagaagcctgcgctgctgacgcgcaaccgctga
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