Pseudomonas qingdaonensis: KH389_07730
Help
Entry
KH389_07730 CDS
T07622
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pqi
Pseudomonas qingdaonensis
Brite
KEGG Orthology (KO) [BR:
pqi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pqi03019
]
KH389_07730 (hrpA)
Enzymes [BR:
pqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KH389_07730 (hrpA)
Messenger RNA biogenesis [BR:
pqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KH389_07730 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
AAA_25
NACHT
T2SSE
ABC_tran
nSTAND_NTPase5
ResIII
SLFN-g3_helicase
SRP54
Motif
Other DBs
NCBI-ProteinID:
QVL20461
UniProt:
A0ABX8DW59
LinkDB
All DBs
Position
1642336..1646247
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDQNAAIEQLLKNLDHAMIAERHRLRRQLHDLRKRPDEAKLAQWAARVQASCDQVAARK
ASVPRIHYDDSLPIAAKRDEIKKVLAAHQVLIIAGETGSGKTTQLPKICLELGRGQHGQI
AHTQPRRIAARSVATRVAEELGTPLGALVGYQVRFEDQSDANTLVKLMTDGILLAETQHD
RFLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSRHFNDAP
IIEVSGRTYPVETWYRPLTSEQDEEGNRVEDDLTVDQAILATLDEIAAHERSIGKGPGDV
LVFLPGEREIRDAAEMLRKAQLRHTEILPLYARLSPAEQQKIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYS
EDDFNGRPAFTDPEILRTNLAAVILQMLHLRLGEIDAFPFIEPPDGKAISDGFNLLQELS
AVNRENQLTPLGRQLARLPVDPRLGRMLLEGAKQGSLQELLIVASALSVQDPRERPPERQ
QAADQAHAQWKDSDSDFAALVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDAH
RQLSLICRDLQLSINKEPADYPRLHKAILSGLLSQIGQKTEDGDYLGARQRRFWVHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQVTLYGMIVVGRRPVHYGPIDPQASRELFIRQALVGGEIQSRAKCLAANTRLLEQLDEL
EAKARRRDILADEETLYAYYEARLPAEIHQTATFDSWYRVTSQKDPQLLIMREEDVLARE
ASEVTATQYPDTLRIGDLSLALSYHFEPNHPRDGVTMRVPAPLLPSLPGERLEWLVPGLL
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRMTFADGSLPQALGRELLRMTGARVSDEA
WAEAAAQVEGHLRMNIEVVDAQGKFLGEGRDLTELTARFVAASQAALAVPQSAKAQQPVQ
AKVFAEVAQTAQQKIAGLSMTVYPALVEEGGTVKEGRFSTQAEAEFQHRRALQRLLLQQL
AEPAKFLRGKLPGLTELGLLYRELGRVDALVEDILLASLDTCILDGESSLPRDGAGLASL
AERKRGHWADHAERLARLTLEILKLWHGLQKRFKGKIDLAQAVALNDIKQQLANLVYPGF
VRETPGIWLKELPRYLKAVELRLEKLGSQVQKDRVWSGELSGLWAQYKARADKHAQEGKR
DEQLVLYRWWIEEYRVSLFAQQLGTKVPISDKRLAKQWSLVEA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccagaacgccgccatcgagcaactgctgaaaaaccttgaccacgccatgatc
gccgagcgccatcgcctgcgtcggcaactgcatgacctgcgcaagcgccccgacgaggcc
aagctggcccagtgggccgcccgggtacaggcctcctgcgaccaggtcgctgcgcgcaag
gccagcgtgccgcgcatccactacgacgacagcctgccgatcgcggccaagcgtgacgaa
atcaagaaggtgctggccgcccaccaggtgctgatcatcgcgggcgaaaccggctcgggc
aagaccacccagttgcccaagatctgcctggaactgggccgcggccagcatggccagatc
gcccacacccagccgcgccggattgccgcgcgtagcgtggccacccgcgtggccgaagag
ctgggtacgccgctgggcgcgctggtcggctaccaggtgcgcttcgaagaccagagcgat
gccaacaccctggtcaagctgatgaccgacggcatcctgctggccgaaacccagcacgac
cgctttctggaacgctacgacacgatcatcgtcgacgaagcccacgaacgcagcttgaac
atcgacttcctgctcggctacctcaagaccctgctgccgcggcgccccgacctcaaggtc
atcatcacctccgcgaccatcgacctggagcgcttttccaggcacttcaacgatgcgccg
atcatcgaggtgtccgggcgtacctacccggtcgagacctggtaccggccgctgaccagc
gagcaggacgaggagggcaaccgcgtcgaggacgatctgaccgtcgaccaggcgatcctg
gccaccctcgacgagattgccgcccatgagcgcagcatcggcaagggcccgggcgacgtg
ctggtgttcctgcccggcgagcgcgaaattcgcgatgccgccgagatgctgcgcaaggca
cagctacgccacaccgaaatcctgccgctgtatgcacggctgtcgccggccgagcagcag
aagatcttccagtcccatccggggcggcgcgtggtgctggccaccaacgttgcggaaacc
tcgctgaccgtaccgggcattcgctacgtgatcgacagcggcacggcgcgcatcagccgc
tacagctaccgtgccaaggtgcagcgcctgcccatcgaggcggtgtcccaggccagtgcc
aaccagcgcaagggccgttgcgggcgggtcgaaccgggcatctgcgtgcgcctgtacagc
gaggacgacttcaatggtcggcccgcctttaccgaccccgagatcctgcgcaccaacctg
gccgcggtgatcctgcagatgctgcacctgcgcctgggcgagatcgacgccttcccgttc
atcgagccgccggatggcaaggccatcagcgacggcttcaacctgctgcaggaactctcg
gcagtcaatcgcgagaaccagctgaccccgctgggccgccagctggcgcgcctgccggtg
gacccgcgtctgggccgcatgctgctcgaaggcgccaagcagggcagcctgcaggagttg
ctgatcgtggccagtgcactgtcggtgcaggacccccgcgagcgtccgcccgagcgccag
caggctgccgaccaggcccatgcgcagtggaaggacagcgactcggacttcgccgcgctg
gtcaacctgtggcgcgggttcgaagaacagcgccaggccctgacggccagcccgctgcgc
aactggtgccgcaagaatttcctgaattacctgcgtctgcgcgaatggcgcgatgcacac
cggcaactgagcctgatctgccgcgacctgcagttgagcatcaacaaggagccggccgac
tacccgcgcctgcacaaggcgattctgtccgggctgctcagccagatcggccagaagacc
gaggacggcgactacctgggcgcgcgccagcggcgcttctgggtacacccgtcctcgggc
ctgggcaagaaacgcccgcaatggctgatgaccgccgaactggtcgagaccaccaagctg
tatgcgcgcatggtggccaagatcgagccggactggatcgagccgctggccgggcacctg
atcaagaagaaccacttcgaaccgcactgggagaagaagcgcggccaggtggtggccttc
gagcaggtcacgctgtacggcatgatcgtggtcggccggcgcccggtgcactacgggccg
atcgacccgcaggcctcgcgcgagctgtttatccgtcaggccctggtgggcggtgagatc
cagtcgcgggccaagtgcctggcggccaacacgcgcctgctcgagcagctcgacgagctg
gaggccaaggcccgccggcgcgacatcctggctgatgaagagaccctgtacgcctactac
gaggcgcgcctgccggccgagatccaccagaccgcgaccttcgacagctggtaccgcgtc
accagccagaaagacccgcagttgctgatcatgcgcgaggaggacgtgctggcccgcgag
gccagtgaagtcaccgccacgcagtaccccgataccctgcgcatcggcgacctgagcctg
gcgctgagctaccacttcgaacccaaccacccccgcgacggcgttaccatgagggtgccg
gcgccgctgctgcccagcctgccgggcgagcgcctggaatggctggtgccggggttgctg
gaagccaagtgcattgcgctggtacgcaacctgcccaaggccttgcgcaagaacttcgtg
ccggtgcccgacttcgtcaaggccgccttgcagcgcatgaccttcgccgacggctcgctg
ccccaggcgctgggccgcgaactgctgcgcatgaccggtgcgcgggtcagcgacgaggcc
tgggccgaggcggctgcgcaggtggaaggccacttgcgcatgaacatcgaagtggtcgat
gcccagggcaagttcctgggtgaaggccgcgacctgaccgagctgacggcgcgcttcgtt
gctgccagccaggccgcgctggccgtgccgcaatcggccaaggcccagcagccggtgcaa
gccaaggtgtttgccgaggtggcccagaccgcccagcagaagatcgccgggctgtcgatg
acggtgtacccggcgctggtggaagagggcggtacggtcaaggaagggcgcttctcgacc
caggccgaagccgagttccagcaccgccgagccttgcagcggctgctgctgcagcaactg
gccgagccggcgaagttcctgcgcggcaagctgccggggctgaccgaactgggcctgctg
taccgcgagctggggcgtgtcgatgcgctggtcgaggacatcctgctggccagcctggac
acctgcatcctcgacggcgagagcagcctgccgcgcgacggtgccgggcttgcttcgctg
gccgaacgcaagcgcggccactgggccgatcacgccgagcgcctggcccgcctgaccctc
gagatactcaagctctggcacggtctgcagaagcgcttcaagggcaagatcgacctggcc
caggccgtggcgctcaacgacatcaagcagcaactggccaacctggtgtacccgggtttt
gtgcgggaaaccccgggcatctggctcaaggaactgccgcgctacctcaaggcagtggag
ctgcgtctggaaaaactcggttcgcaggtgcagaaggaccgcgtgtggagcggcgaactg
agcggtctgtgggcacagtacaaggcgcgtgccgacaagcatgcccaggagggcaagcgc
gacgagcaactggtgctgtaccgctggtggatcgaggaataccgcgtgtcgctgtttgcc
cagcagttgggtaccaaggtaccgatttccgacaagcgcctggccaagcaatggagtctg
gtggaagcctaa
DBGET
integrated database retrieval system
