Pseudomonas qingdaonensis: KH389_10945
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Entry
KH389_10945 CDS
T07622
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pqi
Pseudomonas qingdaonensis
Brite
KEGG Orthology (KO) [BR:
pqi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pqi03032
]
KH389_10945
03400 DNA repair and recombination proteins [BR:
pqi03400
]
KH389_10945
Enzymes [BR:
pqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KH389_10945
DNA replication proteins [BR:
pqi03032
]
Prokaryotic type
DNA Topoisomerases
KH389_10945
DNA repair and recombination proteins [BR:
pqi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KH389_10945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QVL21056
LinkDB
All DBs
Position
complement(2386539..2387576)
Genome browser
AA seq
345 aa
AA seq
DB search
MSVDLPPLPSGLHYVDDSRPGFHRRLLRKHFAYFDAHGQRITAPDTLARIKALAIPPAYT
DVWICADPRGHLQATGRDARGRKQYRYHPDWRELRDSHKYDRMLAFAKRLPRLRKQLDEH
LARPGLDREKVMALVVSLLDNTLIRVGNRQYARDNRSYGLTTLRTRHVQVEGSAIRFRFR
GKSGIEHQVTLKDRRLARIVKRCLELPGQDLFQWQDALGQCHTVGSADVNAYLQQLTGAD
FTAKDYRTWAGSALALELLRELQWQPETEARRQIVAMLKQVASRLGNTPAVCRRSYVHPA
LLERFVLGELHALPRPRARQRMELAEVALARFLMTLNACDTNENH
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacctgccccctttgcccagtggcctgcattacgtggatgacagccgcccc
ggtttccatcggcgcctgctgcgcaagcacttcgcctatttcgacgcccacggccagcgc
atcaccgcaccggataccctggcccgcatcaaggcgctggccataccgccggcctatacc
gatgtatggatctgcgccgacccgcgcggccacctgcaagccaccggacgcgacgcacgt
ggtcgcaagcagtaccgctatcaccccgactggcgcgaactgcgcgacagccacaagtac
gaccgcatgctggccttcgccaaacgcctgccgcggctgcgcaagcaactcgacgagcac
ctggcgcggcccggcctggaccgcgaaaaggtcatggcactggtggtcagcctgctcgac
aacacgctgatccgcgtgggcaaccgtcagtatgcccgcgacaaccgctcctacgggctg
accacgctgcgcactcgccatgtgcaggtcgaaggcagcgcgatacggtttcgctttcgc
ggcaagagcggcatcgagcaccaggtgaccctcaaggaccggcgcctggcacgcatcgtc
aagcgctgcctggaactgccgggccaggacctgttccagtggcaggacgcgctggggcaa
tgtcacaccgtcggttcggcggacgtgaacgcctacctgcagcaattgaccggtgccgac
ttcaccgccaaggactatcgcacctgggccggcagcgcgctggcgctggagttgctgcgc
gagctgcaatggcaaccggaaaccgaagcgcgccgacagatcgtggccatgctcaagcag
gtggcgtcgcgactgggcaatacccccgccgtatgccggcgcagctatgtgcacccggcg
ctgctggagcgcttcgtgctgggcgagctccacgcgctgccacggccacgggcgcgccag
cgcatggagctggccgaggtggccctggcacgttttctcatgacattgaatgcatgcgat
acgaatgaaaatcattaa
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