Pseudomonas qingdaonensis: KH389_18550
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Entry
KH389_18550 CDS
T07622
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pqi
Pseudomonas qingdaonensis
Brite
KEGG Orthology (KO) [BR:
pqi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pqi03032
]
KH389_18550 (topA)
03400 DNA repair and recombination proteins [BR:
pqi03400
]
KH389_18550 (topA)
Enzymes [BR:
pqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KH389_18550 (topA)
DNA replication proteins [BR:
pqi03032
]
Prokaryotic type
DNA Topoisomerases
KH389_18550 (topA)
DNA repair and recombination proteins [BR:
pqi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KH389_18550 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
QVL17390
LinkDB
All DBs
Position
complement(4081436..4084042)
Genome browser
AA seq
868 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASKEPAAKRGKAAAGEAP
ALSPKEKARKQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDRE
GEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRVV
GYMVSPLLWQKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKDAKVR
FEVARQNGEAFKPLNEAQAMAALEKLKASSYTIAKREDRPTSSKPSAPFITSTLQQAASN
RLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVEMARSYIESEFGKKYLPEAPIVY
GSKEGAQEAHEAIRPSDVATHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTTVSV
TAGEFELRAKGRILKFDGYTRVLPQQSKPGDDDVLPEMNQGEVLKLIKLDPSQHFTKPPA
RFSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFS
NLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFSKKLQLAEDAEKGMRANQPTPTNI
ACKECGRHMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESRVLLG
KHRCPICATAMDAYLLDEKHKLHICGNNPDCTGYEIEEGSYRIKGYEGPSLECDKCGSEM
QLKTGRFGKFFGCTNPECKNTRKLLKSGEAAPPKMDAVKMPELKCEKVNDTYVLRDGASG
LFLAASQFPKNRETRAPLVMEIVPHKDEIDPKYHFLCEAPKKDPDGRPTVIRYSRKTKEQ
YVQTEVDGKPTGWRAFYDGKAWKVEDKR
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ctgggcaaccagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttccgccagcaaggagcctgctgccaagcgcggcaaggctgctgccggcgaggcaccc
gcgctgtcgccgaaagaaaaggcgcgcaagcaactggtggcgcgcatgggcgtcgacccg
gaccacggctggaaggccaagtacgagatccttccgggcaaggaaaaggtcatcgaggag
ttgcgccgcctggccaaggatgccgacaccatctatctcgcaaccgacttggatcgcgag
ggggaagccattgcctggcacctgcgcgaagccatcggtggggatgacagccgctacaag
cgcgtggtgttcaacgaaatcaccaagaaggccatccaggaggccttctcccagccgggc
gagctggacatcgaccgtgtcaatgcacagcaggcgcgtcgcttcctcgaccgcgtggtg
ggctacatggtctcgccactgctgtggcagaagatcgcccgtggcctgtcggccggccgg
gtgcagtcggtggccgtgaagctggtggtggagcgtgagcgcgagattcgcgcattcatc
cccgaagagtactgggaagtgcacgccgacctgggtactgccaaggacgccaaggtgcgc
ttcgaggtggctcgccagaacggcgaggccttcaagccgctcaacgaagcccaggccatg
gccgcgctggagaagctcaaggcttccagctacaccattgccaagcgtgaagaccgcccg
accagcagcaagccctcggcgccgttcatcacctcgaccctgcagcaggcggcgagcaat
cgcctcggcttcggcgtgaagaagaccatgatgatggcccagcgtctgtacgaagccggc
tacatcacctacatgcgtaccgactcgaccaacctgtcggtcgatgcggtggaaatggcg
cgcagctacatcgaaagcgagttcggcaagaagtacctgccagaagcgccgatcgtctac
ggcagcaaggaaggcgcacaggaagcgcacgaagcgatccgaccttcggacgtggccacg
cacccgaccaagctcagcggcatggagcgtgatgccgagcgcctgtacgagctgatctgg
cgccagttcctggcctgccagatgccgccggcgcagtacctgtcgaccaccgtcagcgtc
acggcgggcgagttcgagttgcgtgccaagggccgtatcctcaagttcgacggttacacc
cgtgtgttgccgcagcagagcaagccgggcgatgacgatgtactgccggaaatgaaccag
ggcgaagtgctcaagctcatcaagctcgacccgagccagcacttcaccaagccgccggca
cgtttctcggaagcgagcctggtcaaggaaatggaaaaacgcggtatcggtcgcccatcc
acctacgcggcgatcatctccaccatccaggaccgtggctatgtgaccctgcacaaccgc
cgcttctactccgagaagatgggcgacatcgtgaccgagcgtctgtccgagagcttttcc
aacctgatggactacggcttcaccgccggcatggaagagaacctcgacgatgtggcccag
ggcgagcgcgactggaaaaacgtgctggacgagttctacggcgacttcagcaagaagctg
caactggctgaagatgccgaaaagggcatgcgtgccaaccagccgaccccgaccaacatt
gcctgcaaggaatgcggcaggcacatgatgatccgcacagcctccacgggcgtgttcctc
ggttgctcgggctacagcctgccgcccaaagagcgttgcaaggccaccgtgaacctggtg
ccaggtgacgagattgccgccgacgacgagggcgagtccgagtcgcgcgtgctgttgggc
aagcaccgctgcccgatctgcgccacggcgatggacgcctacctgctcgacgagaaacac
aagctgcacatctgcggcaacaaccccgattgcacgggctacgagatcgaggaaggcagc
taccgcatcaagggctacgagggcccgagccttgagtgtgacaagtgcggtagcgagatg
cagctcaagaccggtcgtttcggcaagttcttcggctgtaccaacccggagtgcaagaac
acccgcaagctgctcaagagcggcgaggcggcgccgccgaagatggacgcggtgaagatg
cccgagctcaagtgcgagaaggtcaacgacacctatgtgctgcgtgacggggcttcgggc
ctgttcctggctgccagccagttcccgaagaaccgcgagacccgcgcgcccctggtgatg
gagatcgtgccgcacaaggacgagatcgatccgaagtatcacttcctctgtgaggcgccg
aagaaggacccggacggtcgccctacggtgatccgctacagccgcaagaccaaggagcag
tatgtgcagaccgaggtcgacggcaagccgaccggctggcgagcgttctatgacggcaag
gcgtggaaggtggaagacaagcgctaa
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