Pseudomonas qingdaonensis: KH389_19350
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Entry
KH389_19350 CDS
T07622
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pqi
Pseudomonas qingdaonensis
Pathway
pqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KH389_19350 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pqi03019
]
KH389_19350 (rne)
03009 Ribosome biogenesis [BR:
pqi03009
]
KH389_19350 (rne)
Enzymes [BR:
pqi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KH389_19350 (rne)
Messenger RNA biogenesis [BR:
pqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KH389_19350 (rne)
Ribosome biogenesis [BR:
pqi03009
]
Prokaryotic type
rRNA processing factors
KH389_19350 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QVL17534
LinkDB
All DBs
Position
4263089..4266301
Genome browser
AA seq
1070 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKSPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVDAQEEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEALNNQSSYEIAATETEEVQPAAATRTLVRQEAAVKTAPARANAPVPAPE
APAAPAAPVHALPEPSLFKGLVKSLVSLFAGKEEPVAAAPVVTEKPATERPQRNEERRNG
RQQSRNRNGRRDEERKPREERAERAPREPREERQPREAREETSTREERAPRAPREERQPR
APREDRRPREDRPVRELREPLDATPAPAVREERPERAPREERQPREERAPREERAPREER
APREERAPRPPREERQPRPAEPVEDAAEEQLPNEELLQDDNQEGAEGDRPRRRSRGQRRR
SNRRERQRDANGNVVEGSEDGTEEGAEQAGEQPAAAEKRSEGNAQPSGVELAAGLAVTAA
VATSNISADAEAQANAQAERATAAVDDTPAVVAETPFEAGTVEPVVVETSTESNETARQP
AAEEAVAEQAAIAPVIEQPFEAPVQAVESSIEPVVEVAPQPVEAQIEAEAKVEALVEAPA
QAPEQAPAVEAPVEAPVAAEPVIALPSEPEAPAAVEAEPVIAAEPAPVAEAQAPIAEPAE
VEAPVVTLANGRAPNDPREVRRRKREAEAAAAAAAAEQSQEAAEEHKPLV
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcgactcaacccgaagagttgcgtgttgctctggtagac
ggccagcgcctctacgatctggacatcgagtccggtgcacgcgagcagaaaaaagccaac
atctacaagggcaagatcacccgcatcgagcccagccttgaagccgccttcgtcgatttc
ggctccgagcgccacggctttctgcccctcaaggaaatctcccgcgaatacttcaagaag
tcgcccgaaggccgggtgaacatcaaggaagtgctgagcgaaggccaggaagtcatcgtc
caggtcgagaaggaagagcgcggcaacaagggcgccgccctgaccaccttcatcagcctg
gccggtcgttacctggtcctgatgcctaacaacccgcgtgccggcggcatctcccgtcgc
atcgaaggcgaagagcgcaacgaactgcgcgaagcgctcaacggcctggttgcccctgcc
gacatgggcctgatcgttcgcactgccggcctgggccgcagcagcgaagagatgcagtgg
gacctggactacctgctgcaactgtggaccgccatcaaggaagcgtccctcgaccgcgca
gcgccgttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcgtcgacgcccaggaagaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtg
ccgctgttcaaccgcttccagatcgaaagccagatcgagaccgccttccagcgcgtcgtc
gacctgccatcgggcggctcgatcgtgatcgacccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaggaaaccgccctgcagaccaac
ctggaagcggccgaggaaatcgcccgccaactgcgtctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtcgaagaaaaggtg
cgcgagtgcctggaagccgaccgtgcccgcgtacaggtcggccgaatttcgcgcttcggc
ctgctggaaatgtcccgccagcgcctgcgcccttccctgggcgaaagcagcggcatcgtc
tgcccgcgctgcagcggcaccggcatcatccgtgacgtcgaatcgctgtcgctggcaatc
ctgcgcctgatcgaggaagaagccctgaaggatcgcactgccgaggtgcgtgcccaggtg
ccgatcccggtcgccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgggcgcgtatcgtcattctgccgaacgaccacctggaaaccccgcatttc
gaagtgcagcgcctgcgcgacgacagcccggaagccctgaacaaccagtccagctacgaa
atcgctgcgaccgaaaccgaagaagtgcaaccggctgccgccacccgcaccctggttcgc
caggaagccgcggtcaagactgcaccggcccgcgccaatgctccggtaccggctccggaa
gcccctgctgccccagccgccccggtacacgccctgccagagccaagcctgttcaagggc
ctggtcaagtcgctggtcagcctgttcgccggcaaggaagaacctgtggccgccgcaccg
gtggtaaccgagaagcctgccaccgagcgtcctcagcgcaacgaggagcgtcgcaacggt
cgccagcagagccgcaaccgcaacggtcgtcgcgatgaagagcgcaagccacgcgaagag
cgtgccgagcgcgcgccacgtgagccgcgtgaagaacgccagcctcgcgaagcccgtgaa
gagacctcgacccgcgaagaacgcgcaccacgcgccccgcgtgaagaacgtcagccgcgt
gccccacgcgaagaccgtcgcccacgcgaagatcgcccggtacgcgaactgcgtgagcct
ctggatgccaccccggccccggccgtccgcgaagaacgtcctgagcgcgccccgcgcgaa
gagcgtcagccacgtgaagagcgtgcaccgcgtgaagagcgcgcaccacgtgaagaacgt
gcccctcgcgaggagcgcgcaccgcgtccgccacgcgaagagcgtcagccacgcccggcc
gagccggtcgaggatgcggccgaggagcaactgccaaacgaagagctgctgcaggatgac
aaccaggaaggcgccgaaggcgatcgtccacgtcgtcgctcgcgcggtcagcgtcgtcgc
agcaaccgtcgtgagcgtcagcgtgatgccaacggcaatgtggtcgaaggcagcgaagac
ggcaccgaagaaggcgccgaacaagctggcgaacaacctgctgctgcggaaaaacgcagc
gaaggcaatgcgcagccttcgggcgtggaactggctgccggcctggccgtgactgccgcc
gttgccaccagcaacatcagtgccgacgccgaggcccaggccaacgctcaggccgagcgt
gcaactgctgctgtcgatgacaccccagccgtcgtggccgaaacgcctttcgaggccggc
accgtcgaaccagtggttgtcgaaaccagcaccgagtcgaacgaaacagctcgacagccc
gctgccgaagaagctgttgctgaacaagcggccatcgcccctgtgatcgaacaaccgttc
gaagcaccggtgcaggcagtcgagtcgagcatcgagcctgtcgtcgaagttgctccgcaa
ccagtcgaggcccagatcgaggccgaggccaaggtagaggctctggtggaagcaccggct
caagcccctgagcaggcgccagctgtcgaagcgcccgtcgaggcacctgtagctgccgag
ccggtcatcgccctgccgagcgagcctgaagcgccggctgcagtcgaagccgagccggtc
attgccgctgagccagcaccggtcgccgaggcacaggcaccgatcgccgagcctgccgag
gttgaggcaccggtcgtcacgctggccaacggccgtgcaccgaacgacccgcgtgaagtg
cgtcgccgcaagcgcgaagctgaagccgcagcggccgccgctgctgccgagcagtcgcag
gaagctgcagaagagcataaaccgctcgtctga
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