Pseudomonas qingdaonensis: KH389_19500
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Entry
KH389_19500 CDS
T07622
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pqi
Pseudomonas qingdaonensis
Pathway
pqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KH389_19500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pqi03019
]
KH389_19500
03009 Ribosome biogenesis [BR:
pqi03009
]
KH389_19500
Enzymes [BR:
pqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KH389_19500
Messenger RNA biogenesis [BR:
pqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KH389_19500
Ribosome biogenesis [BR:
pqi03009
]
Prokaryotic type
rRNA helicases
KH389_19500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
QVL17559
UniProt:
A0ABX8DPY8
LinkDB
All DBs
Position
complement(4290483..4292150)
Genome browser
AA seq
555 aa
AA seq
DB search
MTQETGGFAALDLHPSIVAAVIATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLMVHADQKVSAVLRLL
EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPNAQAVLDARIKKLTNSLAPLVADAEATHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALTLEAVEKEQPLVPTSAPRGDRPAGERSERGERERRAPMPLGEGRAR
CRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLKDT
RVAGKQLKLRRYRED
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgctctcgatcttcatccaagtattgttgccgcc
gttatcgccactggctacgaagagccatcggccattcagcagcaatcgatcccgattatt
cttgccggtcatgacatgatcggtcaggcgcagacaggtaccggtaaaaccgctgccttc
gctctgccaatcctgcaccgcatcgacccgagcaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagctaccgcattcgaaacctacgccaagcag
atgccgggcgttaccgtggtagcggtatacggtggtgccccgatgggcccacaactcaaa
gcaatccgtaacggcgcgcagatcgtcgtcgctacccctggccgtctgtgcgaccacctg
cgtcgcgacgagaaggtgctggctaccgtcaatcacctggtgctcgacgaagctgacgaa
atgctcaagctgggcttcatggacgacctggaagtcatcttcaaggccatgccggaaacc
cgccagaccgtactgttctcggccaccctgccgcagtcgatccgtgcgatcgccgagcgt
cacctgcgtgacccgaaacacgtcaagatccagaccaagacccagaccgtgactgccatc
gagcaggcacacctgatggtccacgccgaccagaaggtctcggcggtactgcgcctgctg
gaagtcgaagagttcgatgcactgatcgccttcgtacgtaccaagcaagccaccctggac
ctggccagcgccctggaagccaaaggctacaaggctgccgcgctcaacggtgacatcgcc
cagaaccagcgtgagcgcgtcatcgactcgctcaaggatggtcgcctggacatcgtcgtc
gctaccgacgtcgctgcccgtggtctggacgtaccgcgcatcacccacgtgttcaacgtc
gacatgccgtacgatccggagtcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgcactgctgctggtcaccccgcgtgagcgccgcatgctgcaggtgatc
gagcgtgtgaccggccagaaggttgccgaagttcgtctgcccaacgcccaggccgtactg
gacgcgcgcatcaagaagctcaccaacagcctcgcgccgctggttgccgatgcagaagct
acccacggtgatctgctcgaccgcctgactgccgacatcggttgcagcccgcgtgccctg
gccgcggccctgctgcgcaaggccaccaatggccaggcgctgaccctggaagccgtcgag
aaagagcagccgctggtgccgacttcggccccgcgtggtgatcgtcctgccggtgagcgc
tccgagcgtggcgagcgtgagcgtcgcgcgccgatgccactgggtgaaggtcgtgcacgt
tgccgtaccgcgctgggtgcgcgtgacggtatcgcggccaagaacctgctgggtgcgatc
ctcaacgaaggcggcctggcccgcgaagcgatcggtcgcatccaggtgcgcgacagcttc
agcctggtcgagctgccggaagatggcctcgagaagctgctgaccaagctcaaggacact
cgcgttgccggcaagcagctgaagctgcgtcgttatcgcgaagattga
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