Pseudomonas qingdaonensis: KH389_20430
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Entry
KH389_20430 CDS
T07622
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pqi
Pseudomonas qingdaonensis
Brite
KEGG Orthology (KO) [BR:
pqi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pqi03009
]
KH389_20430 (rlmD)
Enzymes [BR:
pqi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KH389_20430 (rlmD)
Ribosome biogenesis [BR:
pqi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KH389_20430 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
TRAM
Methyltransf_31
Cons_hypoth95
MTS
Methyltr_RsmB-F
Methyltransf_23
Methyltransf_11
TRM5-TYW2_MTfase
RrnaAD
PCMT
Methyltransf_12
Methyltransf_4
Methyltransf_15
PrmA
TPMT
DREV
Motif
Other DBs
NCBI-ProteinID:
QVL17737
LinkDB
All DBs
Position
complement(4482797..4484155)
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AA seq
452 aa
AA seq
DB search
MSKAKRNGGLRFQPTGGTRAPQVPTGKKQRLSIERLAGDGRGIAFFEGRTWFVSGALAGE
EVEARVLNAHGKVVEARLERVFSASEARRPAPCKHFDRCGGCNLQHLPHAAQLELKQRLL
AEQLQRVAGVVPEQWAAPLSGPEFGYRRRARVAVRWDAKARKLDVGFRAEASQDIVAIDD
CPVLVQPLQSILRHLPLLLQSLSKPQVVGHVELFSGTALALLLRHTAPLVEADLARLQAF
CSEAGVQLWLQGEGQPAPANPADTLGFTLEPWNLELAYRPGDFVQVNAQVNTAMIEQALA
WLAPQADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANAQRNKLHNTQFFQ
ADLSQPLATSGWAAGGFCAVLLDPPRDGAFEVVRNIAALGARRLVYVSCNPATLARDTVE
LVKQGYRLKCAGILDMFPQTAHVEAMALFEVG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaggccaaacgcaatggcggtctgcgcttccagccgaccggtggtacccgtgcg
ccccaggtgccaacgggcaagaaacagcgcctgagcatcgagcgcctggccggtgacggc
cgcggcatcgccttcttcgaagggcgcacctggttcgtcagcggcgccctggccggtgaa
gaggtcgaggcacgggtgctcaatgcccacggcaaggtggtcgaggcacgcctggagcgt
gtgttcagcgccagcgaggcgcggcgcccggcgccgtgcaagcacttcgatcgctgtggc
ggctgcaacttgcagcacctgccccatgccgctcagctcgaactcaagcagcgcctgctg
gccgagcagttgcagcgggtggccggcgtggtgcccgagcagtgggccgcgccgttgtcc
ggccccgaattcggttaccgccggcgcgcccgcgtggcggtgcgctgggacgccaaggcc
cggaagctcgacgtgggctttcgcgccgaagccagccaggacatcgtcgccatcgacgac
tgcccggtgctggtacaacccttgcagtcgatactgcgtcacctgccgctgttgttgcag
agcctgagcaagccacaggtggtggggcacgtggagctgttcagcggtaccgccctggca
ctgctgctgcgccataccgcgccactggtcgaggccgacctggcacgtttgcaggcgttc
tgcagcgaggcgggtgtacaactctggttacaaggtgaggggcaaccggccccggccaat
ccagcggacacgctagggtttaccctggaaccgtggaacctggaattggcctacaggcca
ggtgacttcgtgcaggtcaatgcccaggtcaacaccgcgatgatcgagcaggccctggca
tggcttgcgccacaggccgacgagcgtgtgctggacctgttctgcggccttggcaacttc
gccctgccgctggcccggcaggcccgcgaagtggtggcggtggaaggggtgcaggccatg
gtcgatcgggccgcggccaatgcccaacgcaacaaactgcataacacgcagttttttcag
gccgatttatcccagcctctggcgacttcaggctgggcggcaggaggcttttgtgcggta
ctcttggacccaccgcgcgacggtgccttcgaggtggtgcgcaacatcgccgcacttggc
gcccgacgtctggtctacgtgtcgtgcaacccggcgacgctggcccgcgacaccgtcgag
ctggtcaagcaggggtaccggttaaaatgtgccgggatcctcgacatgtttccgcagact
gcgcatgtcgaggccatggcgttattcgaggtgggttag
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