Pseudomonas qingdaonensis: KH389_21710
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Entry
KH389_21710 CDS
T07622
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pqi
Pseudomonas qingdaonensis
Pathway
pqi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
KH389_21710 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pqi03400
]
KH389_21710 (sbcB)
Enzymes [BR:
pqi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
KH389_21710 (sbcB)
DNA repair and recombination proteins [BR:
pqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
KH389_21710 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KH389_21710 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KH389_21710 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QVL17981
UniProt:
A0ABX8DNX5
LinkDB
All DBs
Position
complement(4767458..4768891)
Genome browser
AA seq
477 aa
AA seq
DB search
MSSSIFWHDYETTGINPRSDRPLQVAGVRTDLDLNEIEPPVNLFCQPADDILPHPAACLI
TGITPAQLATQGLCEAEFMTRVHAELARPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYAR
EWQGGNSRWDLIDVVRTAYALRPDGIQWPQRDGQVSLKLELLTAANGIDHGQAHEALADV
RATLAMARLIREKQPRLYAWLFQLRSKQKVLDQVRLLQPLVHISGRFSAARNYLGVVLPL
AWHPRNRNALIVCDLHQDIAPLLTEDAEVLRQRLYTRREEMSEGQLPVPLKLIQINRCPV
VAPLSVLRGEDQQRLGLDMTLYQQRAEQLSAAQAVWQNKLSAIYDSQEFAPSEDPEQQLY
DGFIGDRDRRLCEQVRTVEPEQLATGQWMFDDARLPELLFRYRARNFPQTLDAQERQRWL
GFCQQRLSDPAMGAPNTLEGFEQALQSAWLDADATQRELLAQWRAHAMNLRERFALQ
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
gtgagctccagcattttctggcacgactatgaaaccaccggtatcaacccgcgcagcgac
cggcccctgcaggtggcaggggtgcgcaccgatctggacctcaacgagatcgagccgccg
gtcaacctcttctgccaacccgccgacgatattctgccgcaccctgcggcgtgcctgata
accggcattaccccggcgcagctggccacccagggcctgtgcgaagccgagttcatgacc
cgggtgcacgccgagctggcgcgcccgggtacttgcggggctggctacaactcgctgcgt
ttcgacgacgaagtgacgcgttacagcctgtatcgcaactttttcgacccctatgcccgc
gagtggcagggcggcaacagccgctgggaccttatcgatgtggtgcgcactgcctacgcc
ttgcgccccgatggcatccagtggccgcagcgcgacggccaggtgagcctgaagctggag
ctgctgacggcggccaatggcatcgatcacgggcaggcgcacgaggcgcttgcggatgtg
cgtgccacgttggcaatggcgcgcttgattcgcgagaagcaacccaggctttatgcatgg
ttgttccagttgcgcagcaagcagaaagtcctcgatcaagtgcgtttgttgcaaccgctt
gtgcatatttccggacgcttttctgcggcacgtaattatcttggcgtggtgctgcccctg
gcctggcatccacgcaatcgcaatgcgctgattgtgtgcgacttgcatcaggatatcgcc
ccattgctgacggaagatgccgaagtgttgcgtcagcgtctgtacacccgacgcgaggaa
atgtccgagggacaattgccggtaccgttgaaattaattcagatcaatcgctgcccggtg
gtcgcgcccttgagtgtattgcgcggtgaagatcagcaacgccttggcctggatatgacg
ttgtatcaacagcgtgccgagcagttgagtgccgcccaggccgtgtggcagaacaagttg
agcgctatttatgacagtcaggaattcgccccgagcgaagaccccgagcaacagctgtat
gacggatttatcggtgatcgcgaccgacgcctgtgtgaacaagtaagaaccgtggagcca
gagcaattagccacgggtcagtggatgttcgacgatgcacgattgccggagttgctgttt
cgctaccgtgcgcgcaattttccgcagaccttggatgcgcaggagcgccagcgttggctc
gggttctgccagcagcgcctgagcgacccggcaatgggcgctccgaatacccttgaaggc
ttcgagcaggcattgcagagcgcctggctggatgccgatgccacgcagcgcgagttgctg
gcgcaatggcgagcccatgccatgaacttgcgcgaacggtttgccctgcagtaa
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