Pseudomonas qingdaonensis: KH389_23410
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Entry
KH389_23410 CDS
T07622
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pqi
Pseudomonas qingdaonensis
Pathway
pqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KH389_23410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pqi03019
]
KH389_23410
Enzymes [BR:
pqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KH389_23410
Messenger RNA biogenesis [BR:
pqi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KH389_23410
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
QVL18298
UniProt:
A0ABX8DPR8
LinkDB
All DBs
Position
complement(5124155..5125486)
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AA seq
443 aa
AA seq
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MTFAKLGLIEPLLRALEHLKYTTPTPVQAAAIPAVLAGRDLMAAAQTGTGKTAGFALPLL
QRLVMEGEKVASNSVRALVLVPTRELAEQVHANIVEYAEHLPLRTYAVYGGVSINPQMMK
LRKGIDLLVATPGRLLDLFRQNAVKFNQLQALVLDEADRMLDLGFAEELRSIYAALPVTR
QTLLFSATFSDEIRLMARQMLDDPLSVEVSPRNVAASSVKQWVVPVDKKRKPELFMHLLR
KQRWKQVLVFAKTRNGVDALVERLQAQGVNADGIHGDRPQATRQRALDSFKAREIQILVA
TDVAARGLDIDDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAIE
MLTRKTLPRHEEPDFVPEHRVPETDASGQVVKKPKKPKKPKQGSGKGSLGRWTDSGDTPA
AAPQVKPVRKVPTFNTGPRKRKP
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgccaaacttggcctgattgaacccttgctgcgcgcgctcgagcacctcaag
tacaccaccccgacaccggtgcaggcggcggccatcccggccgtgctggccggccgcgac
ctgatggcggcggcgcagaccggcaccggcaagactgccggcttcgccctgccactgctg
cagcgcctggtgatggaaggcgagaaggtcgccagcaactcggtacgagcgctggtgctg
gtgccgacccgcgagctggccgaacaggtgcacgccaatatcgtcgagtacgccgaacac
ctgccgctgcgcacctacgcggtgtacggcggggtgagcatcaacccgcagatgatgaaa
ctgcgcaagggcatcgacctgctggtggccacgcccgggcgcctgctcgacctgttccgc
cagaacgcggtcaagttcaaccagttgcaggcgctggtgctcgacgaggccgaccgcatg
ctcgacctgggctttgccgaagagctgcgctcgatctacgcggcgttgccggtcacgcgc
cagacgctgctgttttccgcaaccttctccgacgagatccgcctgatggccaggcagatg
ctcgatgacccgctcagcgtcgaggtcagcccgcgtaacgtggcggccagcagcgtcaag
cagtgggtcgtgcctgtggacaagaagcgcaagcccgagctgttcatgcacctgctgcgc
aagcagcgctggaagcaggtgctggtgttcgccaagacccgcaacggtgtggatgcgctg
gtggagcgcctgcaggcgcagggcgtgaacgccgacggcatccatggcgatcgcccccag
gccacgcgccagcgtgcgctggacagcttcaaggcgcgcgagatccagatcctggtggcc
accgatgtggcggcgcgcgggctggatatcgacgacttgccgctggtggtcaacttcgat
ttgccgatcgtggccgaggactacattcaccgtatcgggcgtaccgggcgtgcgggcaat
accggcgaagccatttcgctggtgtgtgccgacgaggtgaacatgctgtcggccatcgag
atgctcacgcgcaagaccttgccgcgccatgaggagccggatttcgtgccggagcaccgg
gtgccggaaaccgacgccagcgggcaggtggtgaagaagccgaagaaaccgaagaagccc
aagcagggcagcggcaagggcagcctggggcgctggaccgacagcggggatacccccgca
gccgcgccgcaggtcaagccggtgcgcaaggtgccgacgttcaataccgggccgcgcaag
cgcaagccttga
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