Pseudomonas qingdaonensis: KH389_23930
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Entry
KH389_23930 CDS
T07622
Symbol
rtcR
Name
(GenBank) RNA repair transcriptional activator RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
pqi
Pseudomonas qingdaonensis
Brite
KEGG Orthology (KO) [BR:
pqi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pqi03000
]
KH389_23930 (rtcR)
Transcription factors [BR:
pqi03000
]
Prokaryotic type
Other transcription factors
Others
KH389_23930 (rtcR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
Mg_chelatase
AAA
AAA_16
NACHT
AAA_22
AAA_30
MCM
AAA_2
TniB
AAA_7
AAA_33
T2SSE
AAA_14
ATPase_2
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
QVL18393
LinkDB
All DBs
Position
5234734..5236317
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AA seq
527 aa
AA seq
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MHKRSVAIGFIGTTLDRNGKGAARWNKWRPTVALCQQPDLSIDRLELIHGKSERDLGLAE
RLREDVLSVSPHTEVRLHRLALHNPWDFEEMYGALHDFASSYHFDTEHEDYLVHITTGTH
VAQICWFLLTEARYLPARLVQTSPARGKEEERDPAGTSTLIDLDLSRYDHIASRFQREQA
HSLAFLKAGIATRNVAFNHSIEQIERVALRSTAPMLLVGPTGAGKSFLARRIHELKRTRH
QLEGRFVEVNCATLRGDGAMSSLFGHIKGAFTGAQNARDGLLRAADGGMLFLDEIGELGA
DEQAMLLKAIEEKRFFPMGADNEVQSDFQLIAGTHRDLRKQVAEGLFREDLYARINLWTF
ELPGLAGRREDIEPNIDFELQRHAREQGRNVRFNLEAKRQYLAFAHSPQARWAGNFRELS
ASITRMATLADSGRIDEPLVSEEITRLQRAWGVAAPTEPLLEGRELDLFDRLQLEAVLRV
CRDARSLSDAGRQLFAVSRQDKEKPNDADRLRKYLARFELDWNQLRS
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgcacaagcgcagcgttgccatcggcttcatcggcaccaccctcgaccgcaacggaaag
ggtgccgcgcgctggaacaagtggcggcccaccgtcgcgctgtgccagcagccggatctt
tcgatcgaccgcctggagctgattcacggcaagagcgaacgtgatctgggcctggccgag
cgcctgcgcgaggatgtactcagcgtgtcgccccacaccgaggtgcgcctgcaccgcttg
gcactgcacaacccgtgggatttcgaagagatgtacggcgcgttgcatgacttcgccagc
agctaccacttcgacaccgagcacgaggactacctggtgcacatcaccaccggcacccac
gttgcgcagatctgctggtttctgctgaccgaggcgcgctacctgccggcgcgactggta
cagacctcgccggcgcgcggcaaggaagaagagcgtgacccggccggcaccagcacgctg
atcgacctcgacctgtcgcgctatgaccacatcgcttcgcgctttcagcgcgagcaggcg
cacagcctggcgtttctcaaggccggcatcgccacgcgcaacgtggcgttcaaccactcc
atcgagcagatcgagcgcgtcgccctgcgctcaaccgccccgatgctgctggtggggccg
accggtgccggcaagtcgttcctggcccggcgcatccatgaactcaagcgcacgcgccac
cagctggagggccgcttcgtcgaagtgaactgcgccacgctgcgcggcgacggcgccatg
tcgagcctgttcgggcatatcaagggcgccttcacgggtgcacagaacgcccgcgacggc
ctgctgcgcgccgccgacggcggcatgctgtttctcgacgaaatcggcgaactgggcgcc
gacgaacaggccatgctgctcaaggccatcgaagagaagcgcttcttcccgatgggcgca
gacaacgaggtgcaaagcgacttccaactgatcgccggcacccaccgtgacctgcgcaag
caggtggccgaagggctgtttcgcgaagacctgtatgcgcgcatcaacctgtggaccttc
gaactgccggggctggccgggcggcgcgaagacatcgagccgaacatcgatttcgaactg
cagcgccacgcccgcgaacagggccgcaacgtgcgcttcaaccttgaagccaagcgccag
tacctggcgttcgcccattcaccgcaagcacgctgggccggcaactttcgcgagctgtcg
gcctcgatcacgcgcatggcgaccctggccgacagcggacgcatcgacgagcccctggtc
agcgaagagatcacccggctgcaacgggcctggggggttgcggcgcccaccgagccgttg
cttgaagggcgtgagctggacctgttcgaccgcctgcaactggaggccgtgctgcgggtg
tgtcgcgatgcccgctcgctgtccgacgcagggcgccagctgtttgcggtatcgcgccag
gacaaggaaaaacccaacgatgccgaccgcctgcgcaaatacctggcgcgcttcgaactg
gactggaaccagctgcgcagctga
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