Pseudomonas qingdaonensis: KH389_24325
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Entry
KH389_24325 CDS
T07622
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pqi
Pseudomonas qingdaonensis
Pathway
pqi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pqi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KH389_24325 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pqi03021
]
KH389_24325 (rpoC)
03400 DNA repair and recombination proteins [BR:
pqi03400
]
KH389_24325 (rpoC)
Enzymes [BR:
pqi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KH389_24325 (rpoC)
Transcription machinery [BR:
pqi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KH389_24325 (rpoC)
DNA repair and recombination proteins [BR:
pqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KH389_24325 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QVL18468
UniProt:
A0ABX8DQH6
LinkDB
All DBs
Position
complement(5301631..5305830)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVNDRDGGSVKNTRIVDTTVGRALLFQVVPPGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGNEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEQGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTDDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTFVGMEEGITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDASGKDLLLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTQVLVENERLGAEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagtaaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggtgttgaagtcgcgctggcaaaagttcgtcgtgag
cgcatggcgcacatcgagctggcctcgcctgttgcccacatctggttcctgaagtcgctg
ccgtcgcgtatcggcctgctgatggacatgaccctgcgtgatatcgagcgcgttctctat
ttcgagagctatgtcgttatcgacccgggcatgaccaccctggaaaaaggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggcgatgacttcgacgcccgcatg
ggtgccgaggccgtccgcgaactgctgcacgctatcgacctggagcacgagattggccgc
ctgcgcgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcga
ctgaagctgatggaggccttccagggctcgggcaacctgcctgagtggatggtcctgacc
gttctgccggttctgccgccagacctgcgtccactggttccgctggatggcggtcgtttc
gcgacctccgacctgaacgacctgtaccgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgacctgtctgcgcctgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgcactgctcgacaacggccgtcgcggccgcgccatcaccggctcgaac
aagcgtcctctgaaatccctggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctcggtaagcgcgttgactactcgggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgcgagttgccagaggtgtgggacgttcttgccgaagtgattcgcgaacacccc
gtactgctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgttcgagccggta
ctgatcgaaggcaaggccatccagctgcacccgctggtctgtgccgcgtacaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctgacgctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccgatcatc
gttccttcgcaggacgttgtactgggtctgtactacatgacccgcgaagccatcaatgcc
aagggcgaaggtcgcgtattcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagcggccctgcacgccaagatcaaggttcgtatcaacgaaaccgtgaacgatcgtgat
ggcggcagcgttaagaacacccgcatcgtcgacaccactgtcggccgtgcactgctgttc
caggttgtaccgccaggtctgtcgtacgacgtggtcaaccagccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgtcatcttc
gctgaccagctgatgtacaccggttttgcctactcgaccatctccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtgctgccaccgacgaa
gtgaaagagatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacctgtggtccaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgaaggcaacgaagtcgagcaggagtccttcaac
tcgatgtacatgatggctgactccggggcccggggttcggcagctcagattcgtcagttg
gccggtatgcgtggtctgatggccaagccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgcgaaggtctgagcgtactgcagtacttcatctcgactcacggtgcgcgt
aagggtcttgcggataccgcgttgaaaaccgcgaactccggttacctgacccgtcgtctg
gtagacgtggcgcaggatctggtggttaccgagatcgactgtggcaccgagcagggtctg
gtcatgaccccgcacatcgaaggcggcgacgttgtagagccgctgggtgagcgcgtactg
ggtcgtgtaatcgcccgtgacgtgttcaagcctggcaccgacgacgtcatcgttccggcc
ggtactctggtcgacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcagctgcgaaacccgctacggcatctgcgccaagtgctacggt
cgcgacctggctcgcggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgca
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacctcggctgccgacagcgtccaggtgaagaacggcggtatggttcgtctg
cacaacctcaagcaggttgagcgtgccgacggcaacctggttgccgtatcgcgttccggc
gagttggcgattgccgacgagttcggtcgtgagcgcgagcgttacaagctgccttacggc
gccgtgatttcggtgaaggaaggcgacaaggtcgacgctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgttaccgaaatgaaaggtaccgtgaccttcgtgggcatg
gaagaaggcatcacgatcaagcgtcagaccgacgaattgaccggcctgaccaacatcgag
gttctggacgtcaaagaccgtccggctgcaggcaaggaaatccgtcctgcaatcaagatg
gtcgacgccagcggcaaggatctgctgttgccaggtaccgacgtaccggctcagtacttc
ctgccagccaacgccctggtcggtgtggctgacggtgcacagatcggtgttggtgacgtt
atcgcgcgtatcccgcaagaaacgtccaagacccgtgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgccgtccgaaagaagcctcgattctggctgaagtcagc
ggtaccatcgccttcggtaaagagaccaagggcaagcgccgtctggtcatcaccccgaac
gatggcagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagtcatctcggacggtcctagcgatccgcacgacatt
ctgcgtctgctgggtgttagcgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggtcgagattgccgagtcgggcgactccagcttcatcaagggcgaccagatg
gaactgacccaggtactggtagagaacgagcgccttggcgcggaagacaagtttgtctcc
aagttcactcgtgtactgctgggtatcaccaaggcctcgctgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgactacctgcgcggcctgaaagaaaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcctaccacagcgagcgcaagcgtcgccgtgatgccgacaagccgttgcgt
gttagcgccagtgaagtggaagctgcactgaccgaagcgctgaactccagcggcaactaa
DBGET
integrated database retrieval system
