Pectobacterium quasiaquaticum: IG609_002850
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Entry
IG609_002850 CDS
T08268
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pqu
Pectobacterium quasiaquaticum
Pathway
pqu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pqu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IG609_002850 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pqu03021
]
IG609_002850 (rpoD)
Transcription machinery [BR:
pqu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IG609_002850 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Sas-6-like_oligomerization
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
URG49535
UniProt:
A0A9Q2ESZ3
LinkDB
All DBs
Position
complement(607454..609292)
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AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTNDADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTA
THVGSELSSEEMDDDDEEKEDEEEEEDDNSIDPELAREKFTELREQYETTRQVIKAHGRS
HALAAQEILNLSEVFKQFRLVPKQFDFLVNSMRSMMDRVRTQERLIIKLCVEQCKMPKKN
FVTMFTGNETNNTWFAAAVAMGKPWSEKLNDVEEDVTRSLQKLQQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctgcttgtcacccgtggtaaggagcaaggc
tacctgacctatgctgaggtcaatgaccatctgccggaagatatcatcgactcggatcag
atcgaagatatcatccagatgattaacgacatgggcatccaggtgatggaagaagcaccg
gatgcagacgatctgttgctggccgaaaacaccaatgatgccgatgaagatgcggcagag
gctgctgcgcaggttctatccagtgtcgaatcggaaattggtcgcaccaccgatccggtt
cgcatgtacatgcgtgaaatgggtaccgttgagctgttgacgcgtgagggcgagatcgat
atcgccaaacgtatcgaagacggtatcaaccaggttcagtgctctgttgccgagtatcct
gaagctattacttacctgctggagcagtatgaccgcgtcgaagcgggcgaaagccgcctg
tccgacctgatcactggcttcgtcgatcctaatgcggaagaggacattgcgcctaccgcg
actcacgttggttccgagctttcgagcgaagaaatggacgatgacgatgaggaaaaagaa
gacgaagaggaagaagaggacgacaacagcatcgatcctgagctggcgcgtgagaagttc
accgagctgcgtgagcaatatgaaacgacccgtcaggttatcaaagctcacggccgtagc
catgcattggcagcacaggaaatcctgaatctgtcagaagtcttcaaacagttccgtctg
gtgccaaaacagtttgatttcctggttaacagcatgcgttccatgatggatcgcgttcgt
actcaggaacgtttgatcattaagttgtgtgttgaacagtgcaaaatgccgaagaaaaac
ttcgtcacgatgttcactggcaatgaaaccaacaacacctggtttgccgcagcagtcgcc
atgggcaagccatggtctgaaaagctgaatgatgttgaagaagacgtcacccgcagccta
caaaaactgcagcagatcgaagaagaaactggcctgacgatcgagcaggtgaaagacatc
aaccgccgtatgtcgattggtgaagcgaaagcgcgtcgtgccaagaaagaaatggtggaa
gctaacctgcgtctggttatttctatcgcgaagaaatacaccaaccgtggtttgcagttc
ctcgacctgattcaggaaggcaacatcggtctgatgaaagcggtagataagtttgaatat
cgccgtggctacaaattctcgacctatgcgacctggtggatccgtcaggcgatcacccgt
tctatcgccgatcaggcgcgtaccatccgcattccggtgcacatgattgagacgatcaac
aaactaaatcgtatctctcgtcagatgttgcaggaaatgggccgcgagccaacgccggaa
gagctggctgagcgtatgctgatgccggaagacaaaatccgtaaagtgctgaaaatcgcg
aaagagccgatttcaatggaaaccccgattggtgatgatgaagattcacatttgggcgat
ttcattgaagatacgacgctggagctgccgctggattccgccacgtcggaaagcctgcgt
tctgcgacacacgacgtactggctggcctgaccgcacgtgaagcgaaagtcctgcgcatg
cgtttcggtatcgatatgaacaccgaccatacgctggaagaagtgggcaaacagtttgac
gttacgcgtgaacgtattcgtcagatcgaagcgaaagcgctgcgtaaactgcgccaccca
agccgttccgaagtgctgcgtagcttcctggatgattaa
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