Pectobacterium quasiaquaticum: IG609_003080
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Entry
IG609_003080 CDS
T08268
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pqu
Pectobacterium quasiaquaticum
Pathway
pqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IG609_003080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pqu03019
]
IG609_003080
03009 Ribosome biogenesis [BR:
pqu03009
]
IG609_003080
Enzymes [BR:
pqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IG609_003080
Messenger RNA biogenesis [BR:
pqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IG609_003080
Ribosome biogenesis [BR:
pqu03009
]
Prokaryotic type
rRNA helicases
IG609_003080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
URG49577
UniProt:
A0A9Q2EZ60
LinkDB
All DBs
Position
660616..662523
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AA seq
635 aa
AA seq
DB search
MTDLFTSFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAF
ALPLLNNLKPELKAPQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDVET
LAAALLKMAQGERPLILPPDPAFRPRREYRDRDESRSDSRGDRRREPRDSREPRDGDRPQ
RRERRDAGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG
MPGDLLSHFTRTRILNKPMNMQLLGDAVAQPERRGGGRPAGAGGERRDGAAPRRSFGGGE
RREGNANGGERRERSFNRDAAAPRAPRRRPADAGQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttatttacttctttttccgatttggggctgtctgctcctattattaacgcc
ctgactgatttgggctatgaaaaaccatcgccaattcaggctgaatgtattccccatctg
ctgagcggtcgcgatgtgctgggtatggcacagactggcagtggtaaaactgcggctttt
gctctgccattactcaataatttaaagcctgagttaaaagcgcctcagatgttggtgttg
gctccaacccgcgaactggctgtccaggttgctgaagcttgtaatgattttgccaagcat
atgcatggcgttaacgtcgttgccctgtacggtggccagcgttatgacgtccaactgcgc
gcattgcgtggtggagcacagatcgttgtgggtacgccgggccgtctgttggatcacctg
aagcgtggtacgctggatctgtccaacctgagtggtttggtgctggatgaagctgatgaa
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggctcagatccctgctgaa
catcagactgcgctgttctctgcgaccatgcctgaagcgattcgccgcattacgcgccgt
ttcatgaaagatccacaagaagttcgcattcaatcaagcgtgactacgcgcccagacatc
agccagagctactggacggtgcagggtatgcgtaaaaatgaagcgctggtacgtttcctg
gaagcggaagattttgatgcggcgattattttcgttcgtaccaaaaacgcgacgttggaa
gtggccgaagccctggagcgtagcggttacaacagtgccgcgctgaacggtgacatgaat
caggcgctgcgtgaacaaacgctggagcgtctgaaagatggtcgtctggatatcctgatc
gcaaccgacgttgcggcgcgtggtcttgacgttgagcgtatcagcttggttgtcaactac
gatatcccaatggattccgagtcttacgtccaccgtattggtcgtacgggccgtgcaggt
cgtgcgggtcgtgcactgctgtttgttgaaaaccgtgaacgccgcctgctgcgtaacgtt
gaacgcacaatgaagctgacgattcctgaagtggaattgccaaatgcagaattgctgggt
caacgccgtctggctaagtttgccgctaaagtacagcaacaactggaaagcagcgatctg
gatatgtaccgtgcgctgttgacgaaattgcaaccgcaggaagagttggatgttgaaacg
ctggctgctgcgctgctgaaaatggcgcaaggcgaacgtcctctgattctgccgccagat
ccggcattccgtccgcgtcgcgaataccgcgatcgtgatgagtctcgtagtgattcacgt
ggcgatcgtcgccgtgaaccccgcgattcccgtgagccccgtgatggtgaccgtccacag
cgtcgtgagcgtcgtgatgcgggtgaaatgcaactgtatcgtatcgaagtgggtcgtgat
gacggcgttgaagttcgccacattgttggtgctatcgccaacgaaggggatatcagcagc
cgctacatcggtaacatcaagctgttcgcgtctcactcgacgattgaactgccgaaaggt
atgccgggtgacctgttatcacactttacccgcacgcgtattctgaacaaaccaatgaat
atgcaattgctgggtgatgcagttgcacagccagaacgtcgcggtggtggtcgtcctgcg
ggtgcgggcggcgaacgtcgtgatggtgcagcgccacgtcgctctttcggcggtggtgaa
cgccgtgaaggtaacgctaacggcggtgagcgtcgcgagcgttctttcaaccgtgatgcc
gctgcaccgcgtgctccacgtcgtcgtcctgctgacgcgggtcaataa
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