Pectobacterium quasiaquaticum: IG609_006160
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Entry
IG609_006160 CDS
T08268
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pqu
Pectobacterium quasiaquaticum
Pathway
pqu00040
Pentose and glucuronate interconversions
pqu01100
Metabolic pathways
pqu02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pqu00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
IG609_006160
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
IG609_006160
Enzymes [BR:
pqu01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
IG609_006160
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GFIT
Motif
Pfam:
Pectate_lyase_4
Glyco_hydro_43
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
URG50108
UniProt:
A0A9Q2IAD0
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Position
1347591..1349159
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AA seq
522 aa
AA seq
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MFRTVISTGRLRTCAVAIALSGFVLSGCDNSQQPVEETAPPDLQVKTAPFGWAAQYQNTD
GKFYATTGGEGAHENSIYVVTNRQELKDALNNIRSPRYIAGDADAELKAKLEPKIIYWQG
TIRGDDLGNGRYANAEDYKTKPNKTTFDFDLYVKAFDQDYMAQLKATADAGGSDAATAST
QLNLLKKQNGQRSQYANNQKAQIQFQVPPNTTILGVGSEAKLVEGYLSLNTLSHTFGKTD
NSNIIIRNITFQAPRDFAPAWDAGDGDKGNWNARYDSVSINASKNVWIDHCTFTDGDYPD
HLEPVLFGKPIQRHDGLLDIEDGADYLTISYNIFSQHDKTVLIGSGDGDKGEYRITFEGN
LWDNSVQRSPRVRFGQVHLLNNYHRGATDTNYPILYAIGMGFDSSILSESNVFNFQGGGA
DETLSIGAYKGSKFKDNGSWFNGNPASNLNQIAVDKCVALQEAEKATATNSGKAVPAWAL
ETCTNELEWSPPYAYSAGKSIAAVEKYVLENAGAGKLDIALP
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtttagaacggttattagtactggtcgtttacgcacctgtgcggtagctatcgccctt
tccggattcgtgctttctgggtgtgataatagccagcagccagtggaagaaacagctccg
ccagatttgcaggtgaaaacagcaccgtttggctgggctgcgcaatatcagaatacggat
ggtaaattttatgcgacaacagggggcgagggcgcgcatgaaaatagcatttatgtcgtc
actaatcgtcaggaattaaaagacgcattaaataatatccgcagccctcgttatattgcc
ggtgatgccgatgcggaattgaaggcaaagttagaacccaagattatctactggcaaggg
actatccgtggcgatgatttaggcaatggacgctatgccaatgctgaggattataaaacc
aaaccgaataaaacgacatttgattttgatttatatgtcaaagcgttcgatcaggattac
atggcgcagttgaaagcgacggcggatgccggtggaagcgatgcagcgacggccagtaca
cagcttaacctgttgaaaaaacagaatggtcaacgttcgcagtatgccaacaaccagaag
gcgcagattcaatttcaggtaccgccaaataccacgattttaggtgtgggtagcgaagca
aaattggtggaaggctatttatccctcaataccctgagccacacgttcggcaaaacggat
aacagcaacatcattatccgtaatattacgtttcaggcaccgcgtgactttgccccagcc
tgggatgcgggcgacggtgataaaggtaactggaatgcgcgttatgattccgtgtcgatt
aatgccagtaaaaatgtctggatcgatcactgcacgtttacggacggtgactatccagat
catttagaaccagtgttatttggcaagcctatccagcgccacgacggcttactggatatc
gaagacggtgctgactacctgacgatttcctacaacattttctcccaacatgacaaaacg
gtattaattggctctggcgatggtgataagggggaataccgaatcacttttgaaggcaat
ttatgggacaacagcgtgcagcgttcgccgcgtgtacggtttggtcaggtgcatttgctg
aataactaccatcgtggggcaacggatacgaattaccccattctgtatgccattggaatg
ggcttcgattcatccattctttccgaaagtaacgtctttaatttccagggcggcggggcg
gatgaaactctgagcatcggtgcctacaagggaagcaaatttaaagacaacggctcttgg
ttcaatggcaatccggcaagcaatttgaatcaaatcgcagtagataaatgtgtcgcattg
caagaagccgagaaggccacagctacaaactctgggaaagccgtaccagcgtgggcgctg
gaaacctgcaccaatgaactggaatggagcccgccttatgcgtatagcgcagggaaatcc
attgctgccgttgagaaatacgtcctggagaatgccggcgcggggaaactggatattgct
ctgccgtag
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