Pectobacterium quasiaquaticum: IG609_009580
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Entry
IG609_009580 CDS
T08268
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pqu
Pectobacterium quasiaquaticum
Brite
KEGG Orthology (KO) [BR:
pqu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pqu03016
]
IG609_009580 (rnd)
Enzymes [BR:
pqu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
IG609_009580 (rnd)
Transfer RNA biogenesis [BR:
pqu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IG609_009580 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
URG50719
UniProt:
A0A9Q2EQ13
LinkDB
All DBs
Position
2062108..2063232
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AA seq
374 aa
AA seq
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MNYQLITSDIGLQQVCTQARRFPQVALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLTI
TDWAPFQALLRDEQVTKFLHASSEDLEVFLNAFGTLPTPFIDTQILAAFLGKPLSYGFAA
LVADYMGVTLDKSESRTDWLARPLSEKQCDYAAADVFYLLPMAIQLVADTQAAGWMNAAL
DECLLLCQRKQDILAPALAYREFGNAWQLRGRNLACLQRLAEWRLRKARERDSAVNFVVR
EENLLQVARCLPTSLGELSSLGLSGPEIRYHGKTLLDCVVQTDGIADADCPPPVNNLIDY
PSYKKAFKDIKALVQRVSEQSGLSAELLASRRQINRLLNWHWKLSGQDTGMPEMLSGWRG
QLYGDELREIVQDY
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcacttccgacattgggttacaacaggtttgcacccaggcgcga
cgctttccgcaggtggcattggacacagagttcgtcagaacccgcacgtattatccgcaa
ttagggttgattcaattgtatgacggcgaacagctttcactcatcgacccgctaacgatt
accgactgggcaccctttcaggcgttactgcgtgacgaacaggtcactaaattcctgcat
gcgagcagtgaagatctggaagtgtttctcaatgcgtttggaacactgcctacgcctttc
atcgatacacagattctggccgcatttttaggtaagccgctctcatatggttttgctgcg
ctagtggccgactacatgggcgtgacgctggataaaagtgagtcgagaacggactggctt
gcacgtccgctgagcgaaaaacagtgtgattacgccgctgccgatgtgttctatttgttg
ccgatggccattcaactggtggccgatacgcaagcagcagggtggatgaacgcggcgctg
gatgagtgtctcctgctgtgtcagcgtaaacaggatatcttggcacctgcgctggcctat
cgcgaatttggcaatgcctggcaactgcgtggccggaatctggcttgccttcagcgtctt
gccgagtggcgtttgcgtaaagctcgtgagcgagacagcgcggtgaattttgtcgttcgt
gaagagaatctgttgcaggtggcgcgttgtctgccgacttcgctgggtgaactgagctcg
ctggggctgagcggccctgaaatccgctaccacggcaaaacgctgctggactgtgttgta
cagacggacggtattgctgatgcggattgcccaccgccggtgaataatttgatcgactat
cccagctataaaaaagcgtttaaagatattaaagcactggtgcagcgcgtgagcgaacag
agtggattatccgccgagctattggcctcacgtcgccaaattaatcgcctgctgaactgg
cactggaaattaagcgggcaagatacgggaatgccagaaatgttgtctggctggcgcggc
cagttatatggtgatgaactgcgtgaaattgtgcaagattattaa
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