Pectobacterium quasiaquaticum: IG609_010910
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Entry
IG609_010910 CDS
T08268
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pqu
Pectobacterium quasiaquaticum
Brite
KEGG Orthology (KO) [BR:
pqu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pqu03019
]
IG609_010910 (hrpA)
Enzymes [BR:
pqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IG609_010910 (hrpA)
Messenger RNA biogenesis [BR:
pqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IG609_010910 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
T2SSE
NACHT
PhoH
ResIII
AAA_25
Phage_int_SAM_2
Zeta_toxin
CHASE3
Motif
Other DBs
NCBI-ProteinID:
URG47355
UniProt:
A0A9Q2ES71
LinkDB
All DBs
Position
complement(2372419..2376306)
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLSALSTQLSELMLRDRQRLRRRLQGAAKVSSPQAQAAIAQEIEGEIAAARQKVENR
RASCPAIHYPEQLPVSQKKDEILDALRHHQVIIVAGETGSGKTTQLPKICLELGRGVHGL
IGHTQPRRLAARTVADRIAAELETPLGGSVGYKVRFNDQVSDNTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFIMGYLRQLLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVDVRYRPVVEDADDSDRDQLQAIFDAVDELTREGLGDILVFMSGEREIR
DTAEALTRLDLPHTEILPLYARLSNQEQNRVFQSHHGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVAAGVCIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAINLAENGHYR
LTPQGQQLAQLPIDPRLARMVLEARKTGCVREVMIITAALSIQDPRERPMDKKQASDEKH
RRFADKDSDFLAFVNLWDYLRDQQKALSSSQFRRQCRTDFLNYLRVREWQDIYTQLRQVV
KELGLPVNSEPADYLSIHCALLTGLLSHVGQKDIEKQEFSGARNARFAIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWIEPLAQHLIKRSYSDPHWEKAQGTVMAQEKVTLF
GLPIVAARKVNYSQIDPALSREMFIRHALVEGDWQTHHAFFRANLKLLAEVEDLEHKSRR
RDILVDDETLFAFYDQRLPHDVVSSRHFDTWWKAASRDNADLLNFEKSMLIKDGAEKVSA
LDYPNFWHQGSLKLRLSYQFEPGADADGVTVHIPLPILNQVREEGFEWQIPGVRRELTIA
LIKSLPKPLRRNFVPAPNYAEAFLARTTPLEKGLLDALERELRLMTGVTVPREAWQWDQV
PDHLKITFRVIDEKNRTQREGKDLNALKDQLKDKVQQTLSSVVDDGLEQRGLHVWSFGSL
PDCYEQKRGGYSVKAYPALVDEKDSVAIRLFDTPHQQQQVMRQGLRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLDLIDDCIACAVDKLIESSGGPVWQEEAFQQLHEKVRAEL
NDTVVDIAKQVEQILTAVFTINKRLKGRVDMAMALALSDIKSQMTGLVFRGFVTANGWQR
LSDVLRYLQAIERRLEKLAQDVHRDRAQMLKVEHVQQAWQQWWNKLPAERRDDDDVKAVR
WMLEELRVSYFAQQLGTPFPISDKRVLQAMEQVEG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcacctctcagtgcattatctacgcagttaagtgagctaatgcttcgcgatcgg
caacgtctgcgccgccgtttacagggtgcggcgaaggtcagtagcccgcaggctcaggcg
gcgatcgctcaggaaattgagggggaaatcgctgccgcgcgccagaaagtcgagaaccgg
cgggcaagctgtccggctattcactatcccgaacaactgcccgttagccagaaaaaagac
gagatactggatgcgctgcgtcatcatcaggtgattatcgtcgcgggcgagacaggatcg
ggtaaaactacgcaactgccgaaaatctgtctcgaactggggcgcggcgtgcacggttta
atcggccacacgcagccgcgtcgtctggcagccagaaccgttgctgaccgcattgctgcc
gagctggaaacgccgctgggtggcagcgtagggtataaagtccgctttaacgatcaggtg
agtgacaatacgctggtcaaactgatgaccgacggtattctgctggcggaaattcagcag
gatcgcctgttgatgcagtacgacacgctaatcatcgatgaagcgcatgaacgcagcttg
aatatcgatttcatcatgggctatttgcgtcagctgttgccaaagcgccctgatttaaaa
gtgattattacgtcggcgaccatcgatccacagcgcttctcccgccactttaataacgca
ccgatcattgaagtgtccggacgaacctatccggtggacgtgcgctatcgtcccgtggtg
gaagatgctgatgacagcgatcgcgatcagctacaggcgatttttgatgcggttgatgaa
ctgacgcgcgaagggctgggggatattctggtcttcatgagcggtgaacgtgaaattcgc
gatacggcagaggcgctgactcgtctggacttgccgcatactgaaatcctcccgctgtac
gcccgcctgtcgaatcaggaacagaaccgcgtctttcaatcacatcacggtcgccgtatc
gtgctggcgaccaacgtggcggaaacctcactcaccgtgccagggattcgctatgtgatc
gaccccggtaccgcacgcatcagccgctacagtttccgcaccaaggtacaacgcctaccg
attgaacccgtctcgcaggcgtcggcgaatcagcgtaaaggacgctgtggccgtgtcgct
gctggggtgtgtatccgtctctattccgagcaggatttcctgtcgcggcctgaatttacc
gatcccgagattcttcgtaccaatctggcttccgtcattctgcaaatgacgtcgctgggg
ctaggcgatatcgccgcgttcccgtttgttgaagcgccggataaacgcaacattcaggac
ggcgtgcggctgctggaggaattaggcgcgattaatctggcggagaacgggcattaccgc
ctgacgccgcaggggcaacaactggcacaattgccgatcgatccacgtttggcgcgaatg
gtgctggaagcgcgtaaaaccggctgtgtgcgtgaagtgatgatcatcaccgcggcgctg
tcgattcaggatccgcgcgaaaggccgatggataagaaacaggcatcggatgagaaacac
cgtcgttttgccgataaagactccgattttctggctttcgtcaatctgtgggattacctg
cgtgaccagcaaaaggcactgtcttccagccaattccgccgccagtgccgtacggatttc
cttaactacctgcgcgtgcgcgaatggcaggatatctacacgcagttgcgtcaggttgtg
aaagagctgggactgccggtcaatagcgaaccggcagattacctgagcattcactgtgcg
ctgctcactggcttgttgtcacatgtcggacagaaagatattgaaaaacaggagttcagc
ggcgcgcgtaacgctcggtttgcgattttcccaggctcggggctattcaaaaaaccgcct
aagtggacgatggtcgctgaactggtggaaaccagccgtttgtggggacgtattgccgcg
cgtattgagcccgagtggatcgaaccgctggctcagcacctgattaaacggagctacagc
gatcctcattgggaaaaagcacagggcactgtgatggcgcaggagaaggtgacgctcttc
gggctgccgattgtcgcggcgcgcaaggtgaactacagccaaattgatccagcgctgtcg
cgtgaaatgtttatccgccacgcgctggtagaaggcgactggcaaacgcatcacgccttt
ttccgcgccaacctcaagttgctggcggaagtggaagatctcgagcataaatcgcgccgc
cgcgacattttggtcgatgacgagacgctgtttgctttctatgaccagcggttgccacat
gatgtggtgtcgtcacgccattttgacacatggtggaaagccgctagccgggataatgct
gacctgcttaattttgaaaagagcatgttgatcaaagacggcgcggagaaggtgagcgcg
ctggactacccgaacttctggcatcagggcagcctgaaattacgcttgtcttatcagttt
gaaccgggcgcggacgccgatggtgttacggttcatattccgctgcctattctcaatcag
gtgcgtgaagagggctttgagtggcagattcccggcgtacgccgcgaactgacgatcgcg
ctgattaaatcgttgcctaagccattacgtcgtaactttgttcctgcaccgaactatgcc
gaagcgtttctggcgcgtaccacgccattagagaaaggactcttggatgcgctggagcgt
gaactgcggctgatgacgggcgtgacggtgccgcgtgaggcgtggcagtgggatcaggtg
cccgatcatctgaaaatcacattccgcgtcattgatgagaaaaatcggacgcagcgggaa
ggcaaagatctgaacgcgctgaaagatcagcttaaggataaagtgcagcaaacgttgtca
tccgtagtggatgacgggctggagcagcgcggtctgcacgtctggagcttcggttcgttg
ccggactgctatgagcagaagcgtggcggctactcggttaaagcttatccggcgttggtg
gatgaaaaggatagcgtggcgattcgcttgttcgacacgccgcaccagcaacagcaggtg
atgcggcaggggctgcgccgtctgttattgctgaacattccgtcgccgattaaatatctg
catgaaaagctgccgaacaaggcgaaactcggtctttatttcaatccgtatggcaaagtg
ttggatctcatcgatgactgcatcgcctgcgcggtggataaactgattgaatcatccggt
ggtccggtctggcaggaagaggccttccagcagttgcatgaaaaagtgcgtgcggaactg
aatgatacggtggttgatatcgccaaacaggttgagcaaatcctaacggcggtcttcacc
attaacaagcgtctgaaagggcgtgtagacatggcgatggcgctggcgttaagtgatatc
aagagccagatgaccggtctggtgttccgtggttttgtgactgcaaacggctggcagcgt
ctgtcggacgtgctgcgttatctgcaagcgatagaacggcgtctggagaaactggcgcag
gatgttcaccgcgaccgggcgcagatgttgaaagtggagcatgttcaacaagcgtggcaa
cagtggtggaataagctgcctgcggagcgacgtgacgacgacgatgtgaaagcggtgcgc
tggatgcttgaagagttgcgtgtcagctactttgcccagcagctaggaacgccgttcccg
atctcggataagcgcgtattacaggcgatggagcaggtcgaagggtaa
DBGET
integrated database retrieval system
