Pectobacterium quasiaquaticum: IG609_012110
Help
Entry
IG609_012110 CDS
T08268
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pqu
Pectobacterium quasiaquaticum
Pathway
pqu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IG609_012110 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pqu03400
]
IG609_012110 (mfd)
Enzymes [BR:
pqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IG609_012110 (mfd)
DNA repair and recombination proteins [BR:
pqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IG609_012110 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
URG47574
UniProt:
A0A9Q2ENE8
LinkDB
All DBs
Position
2645570..2649022
Genome browser
AA seq
1150 aa
AA seq
DB search
MMPENYRYSLPPKAGEQRLLGQLTGAACAVECAEIIERHAGLVVLIAPDMQNALRLRDEI
QQFTDQHVTTLPDWETLPYDSFSPHQEIISTRLSTLYQLPNMTRGVLILPVNTLMQRVCP
HSFLHGHALVLKKGQRLSRDKLRSQLEQAGYRSVDQVMEHGEYATRGALLDLFPMGSEEP
YRIDFFDDEIDSLRLFDVDTQRTLNEVQYINLLPAHEFPTDKTAIELFRSQWREQFEVRR
DAEHIYQQVSKGVWPAGIEYWQPLFFSEPLPSLFSYFPNNTLLVNTGNLEQSAERFWQDI
QQRFESRRVDPMRPLLPSDSLWLRVDSLFAELKEWPRVQLRTDTLPEKAANVNLAYLPLP
DLAIQHQQKSPLDTLRRFIEQFDGQVIFSVESEGRRETLQELLARIKLNPTLINTLEQAQ
ERGTYLIIGASEHGFIDTLRQRALICESDLLGERVSRRRQDNRRTINTDTLIRNLAELRP
GQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADEN
APLHKLGGDAWSRARQKAAERVRDVAAELLDIYAQRAAKSGFSFKHDKTQYQLFCESFPF
ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTT
LLAQQHFDNFRDRFANWPVKIEMISRFRSAREQTQVLKETQEGKVDILIGTHKLLQSDVH
WRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATP
PARRLAVKTFVREYDNLVVREAILREILRGGQVYYLYNDVENIEKATQRLAELVPEARIT
IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL
RGRVGRSHHQAYAYLLTPNPKAMSTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL
GDDQSGQMTSVGFSLYMELLENAVDALKAGREPSLEDLINSQTDVELRLPALLPDDFIPD
VNMRLSLYKRIASAKTTAELDELKVELIDRFGLLPDASRYLLQIAALRQQAQTLGIRRIE
GNEKGGFIEFSEKNRVDPSHLIGLLQRDPGTYRLDGPTRLKFMKDLSDRPQRIEFIGSLL
GNMAQHTLAA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgaaaattaccgttattcgctgccgcccaaagcgggtgagcagcgcctgctg
ggccagttaaccggtgctgcctgcgccgttgaatgtgcagaaatcattgaacgccacgcc
gggctggtggtgcttatcgcgccggatatgcaaaacgctctacgattgcgtgatgaaatt
cagcaatttaccgaccagcacgtcaccaccctgcctgactgggaaacgctgccctacgat
agtttttctccgcatcaggaaattatttcgacccgcctttccacgctctatcaattgccc
aatatgacgcgcggcgtcctaattctgccggtcaacacgctgatgcagcgcgtttgtccg
cacagtttcctgcacggccatgcgctggtgttgaaaaaaggccagcgcctctcgcgcgat
aagctgcgttcacagttggagcaggcgggctaccgcagcgtcgatcaggtcatggaacac
ggtgaatatgccacgcgcggcgcgctgctggatctgtttccgatggggagcgaagagccc
taccgtatcgatttctttgacgacgagatcgacagcctgcgcctgttcgatgtggatacc
cagcgcacgctgaatgaagtgcagtacattaatctgctgcctgcacacgaattcccgacc
gataaaaccgccatcgaacttttccgcagccagtggcgcgagcagttcgaggtacgacgc
gatgccgagcacatttatcagcaagttagcaaaggcgtctggcctgccgggatcgaatac
tggcagccgttattcttcagcgaaccactgccatcgctgttcagctatttcccgaacaac
acgctgctcgttaacaccggtaatcttgaacagagcgccgagcgtttctggcaggatatt
cagcagcgttttgaaagccgtcgtgtcgatccgatgcgaccactgttgccatcagactct
ctttggctgcgcgtagacagcctgttcgctgagttgaaggaatggccacgcgtgcagttg
agaactgatacgctgccagagaaagccgccaacgtgaacctggcctacctgccgttgccg
gatctcgccattcagcatcagcagaaatccccgctagatacgctacgccgctttatcgaa
cagttcgacggtcaggtcattttctccgtcgagagcgaaggccgccgtgaaacgctgcaa
gagctgctggcgcgtatcaaactgaacccgacgctcatcaatacgctggaacaggcacag
gagcgtggcacttatctgatcatcggtgccagcgaacacggttttatcgacacactgcgt
cagcgcgcgttgatctgcgaaagcgatctgctgggtgagcgcgtcagccgtcgtcgtcag
gataatcgccgcacgatcaataccgatacgctgatccgcaatctggcagaactgcggccg
gggcagcccgtcgttcatctcgaacacggcgtgggtcgctatgctgggctgactacgcta
gaagccggtggaatcaaggccgaatacctgattttgacctatgcgggtgaagacaaactg
tatgttcctgtttcctcactgcatttgatcagccgctacgcgggcggtgccgatgagaat
gcgccgctgcataaactggggggcgatgcctggtcacgcgcgcggcaaaaagcggcagaa
agggtgcgcgatgtcgccgccgaactgcttgacatttatgcccagcgtgcggcgaaaagc
ggcttttcctttaagcatgacaaaacacagtatcagcttttctgcgaaagtttccccttc
gaaaccacgcccgatcaggcgcaggccatcaacgccgtgctgagcgacatgtgccagccg
ctggcgatggatcgtctggtctgtggcgatgtcggctttgggaaaaccgaagtggcgatg
cgcgccgcctttttagcggttgaaaaccataaacaagttgccgttctggtgccgacaacg
ctgttggcacagcagcactttgacaacttccgcgatcgctttgccaactggccggtgaag
attgaaatgatctcccgcttccgcagcgcgcgtgaacaaactcaggtgctaaaggaaact
caagaaggcaaagtcgatattctgattggcacccataagctgttgcagagcgacgtgcac
tggcgcgacttagggttgctgattgtggatgaagagcatcgcttcggcgtgcgtcacaaa
gagcgcatcaaagcgatgcgggcagatgtcgatatccttacgctgaccgctacgccgatt
ccgcgcacgctcaacatggccatgagtggaatgcgcgacttgtcgatcatcgccacgccg
ccagcccgccgtttagcggtgaaaacgttcgtgcgcgaatatgacaatctggtggtgcgc
gaagcgattctgcgtgaaattctgcgcggcggacaagtgtattacctctataacgacgta
gaaaatatcgagaaagccacccagcgactggcagagctggtgccggaagcacgtatcacg
atcggccacggccagatgcgcgaacgcgaactggaacgggtcatgaacgactttcatcac
cagcgttttaacgtgctggtgtgtaccacgatcatcgaaacggggatcgatatcccgagc
gctaacaccattatcatcgagcgtgccgatcacttcggtctggcacagttgcaccagttg
cgcggtcgcgtcggccgttcccaccatcaggcttacgcctacctactcacgccgaatcct
aaagcgatgagcaccgatgcgcagaagcgtctggaagcgattgcctcattggaagacctc
ggcgctggttttgcgttggcaacgcacgatctggaaatccgtggcgccggtgaactgctc
ggggacgatcagagcggacaaatgaccagcgtcggtttctcgctctatatggaactgctg
gaaaacgccgtcgatgcgctgaaagcgggccgagagccatcgctggaggatctgatcaac
agtcagaccgacgtcgaactacgtttgcctgccctgctgcccgatgatttcatccctgac
gtcaatatgcgcctgtcgttatacaaacgtatcgccagcgcgaaaaccaccgccgagctg
gatgagctgaaggtcgaactgatcgatcgcttcggtctccttcctgatgcaagccgctat
ctgttgcagattgccgccttacgtcagcaggcacagacgttgggtattcgtcgtatagaa
gggaatgaaaaaggtggttttatcgaattcagcgagaaaaatcgcgtcgatccgtcccat
cttatcggcctgttacagcgcgatccgggcacctaccgtcttgatggcccaacccgcctg
aaattcatgaaggatttaagcgaccgtccgcaacgcatcgagtttatcggctcactgctg
gggaacatggcgcaacatacgctggcggcgtaa
DBGET
integrated database retrieval system
