Pectobacterium quasiaquaticum: IG609_017115
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Entry
IG609_017115 CDS
T08268
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pqu
Pectobacterium quasiaquaticum
Brite
KEGG Orthology (KO) [BR:
pqu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pqu03021
]
IG609_017115 (rapA)
Transcription machinery [BR:
pqu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
IG609_017115 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
AAA_34
Motif
Other DBs
NCBI-ProteinID:
URG48464
UniProt:
A0A9Q2ERH1
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All DBs
Position
3750064..3752967
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AA seq
967 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAVDTRMITLLFPASGENRLYSRSDAPITRVMFNPGDT
VTSHEGWQLKVDDVREEKGLLVYCGQRLDDETSAELREVFLDSKLTFNKPQDRLFAGQID
RMDRFALRYRARKHQNEQARQQWGGLRGMRASLIPHQLHIAHEVGQRHAPRVLLADEVGL
GKTIEAGMIIHQQLLAGRASRVLIVVPETLQHQWLVEMLRRFNLLFSLFDDERYAEAKLD
SSNPFETEQLVICSLGFVQRSAQRFAQLVNADWDLLVVDEAHHLVWSEESPSPEYQAIET
LARATPAVLLLTATPEQLGQQSHFARLRLLDPNRFHDYKEFVAEQQQYRPVADAVTLLLA
GEKAKTAELNALSDLLGEQDIEPLLKAINSDSDDNQKARQELITMLMDRHGTSRVLFRNT
RQGVKGFPQRVLHQIRLPLPAQYQTAIKVSGIMNANKALEVRARDMLYPEQIYQQLEGDD
ATWWNFDPRVEWLLNYLTANRNEKILVICAQAATALQLEQVLRTREAIRAAVFHEGLSIL
ERDRAAAYFASEEEGAQVLICSEIGSEGRNFQFASHLVMFDLPFNPDLLEQRIGRLDRIG
QAKEIQILVPYLESTAQALLVRWYHEGLDAFEHTCPTGRTIYDAHHTQLIERLTTVGEQQ
GLDEFIHVCRQQHDSLKQQLEQGRDRLLEMHSNGGEQAQLLAQAIAEQDNDVNLVTFALN
LFDIVGINQEDRSDNLIILTPSDHMLVPDFPGLPQDGCTITFDRDQALSREDAQFISWEH
PLIRNGLDLVLSGDTGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKHLQLTRFLPPTPV
RLLMDRKGTNLAAQVEFESFNRQLNAVNRHTSSKLVNAVQADVHAMLQQAEALVETQARQ
LITEAQEQADLQLRRELERLEALKAVNPNIREDELTALENQREQVLSNLHEANWRLDAIR
LVVVTHQ
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcagcgctggatcagcgatacggaaagcgaacttggactggga
acggttgttgccgtcgatacgcgtatgattacgctgcttttccctgccagcggtgaaaac
cgactttattcccgcagcgacgcccccatcacccgcgtgatgttcaatcccggcgacacc
gtcacaagccatgaaggctggcagctcaaagtggatgacgtgcgagaagaaaaagggttg
ctagtgtattgcggccaacgcctggacgatgaaacgtcggcggaactgcgtgaagtcttt
ttggatagcaaactgacgtttaacaaaccgcaagatcgcctgttcgccggacagatcgat
cgtatggatcgctttgccctgcgctatcgcgcccgcaagcatcagaacgagcaggcgcga
caacaatggggcggattgcgcggcatgcgtgccagccttatcccccatcaacttcatatc
gctcatgaagtcggccaacgccacgcgccacgcgttttgctggcggacgaagtcggactg
ggaaaaaccattgaggcggggatgatcatccaccagcaactgctggcgggtcgtgctagt
cgcgtgctgattgtcgtgccggaaacgctgcaacaccagtggctggtcgaaatgctgcgc
cgctttaacctgctgttttccctgtttgacgacgagcgctatgccgaagccaagctggac
agcagcaatccgtttgaaactgaacagttggtcatctgctcactgggatttgtgcaacgc
agcgcccagcgctttgcgcagctcgtcaacgccgactgggatctgctggtggtggatgaa
gcccaccatctggtctggagcgaagaaagccccagcccagaatatcaggctattgaaacg
ctggcacgcgccacgccggccgttctgctgttaaccgcgacgccggaacagcttggccag
cagagccactttgcgcgcttacgcctgctcgatcccaatcgtttccacgactataaggag
ttcgttgccgaacagcagcagtaccgtccggtcgccgatgccgtcacgttgctgttagcg
ggcgaaaaggctaaaacggctgaactgaatgcgctgagcgatctgctgggcgagcaagac
atcgagccgttactgaaagccatcaacagcgatagcgatgacaatcagaaggcgcgtcag
gaactgatcaccatgttgatggatcgccacggcaccagccgcgtgctgttccgtaacacg
cgtcaaggggttaaaggcttcccgcagcgtgtcctgcatcaaattcgcctgccgctgccg
gcgcagtaccaaacggcgattaaagtatccggcattatgaacgcgaataaggcgctggaa
gtccgcgcccgcgacatgctgtacccggaacaaatttatcaacagctcgaaggggacgat
gccacctggtggaacttcgatccacgcgtagaatggttactgaactacctgaccgccaat
cgtaatgaaaaaatcctagtgatctgtgcgcaggcagccaccgcgctacagttggagcaa
gtgctgcgcacgcgtgaagcgatccgcgccgccgtcttccacgaagggctgtcgattctg
gaacgtgaccgcgccgccgcctattttgcttccgaagaagaaggtgcgcaggtgctgatc
tgttcagagattggttccgaaggccgtaacttccagtttgccagccatttagtgatgttc
gatctgccgttcaaccccgacctgctggaacagcgtattggtcgtctggaccgtatcggg
caggccaaagaaattcagattctggtgccgtatctggaaagcaccgcacaggcgttgctg
gtgcgctggtatcacgaagggctggacgcatttgagcacacctgcccgacaggccgtacc
atctatgatgcccaccacacgcagctgatcgagcgactgacgacagtcggtgaacagcag
ggactggatgagtttatccatgtttgccgtcaacagcacgacagcctgaaacaacagctt
gaacaaggccgcgatcgcctgttggaaatgcattctaacggtggcgaacaggctcaactg
ctagcgcaagccattgccgagcaggataatgacgtcaatctggtgacattcgccctgaac
ctgttcgatattgttggcatcaatcaggaagatcgcagcgataacctgatcatcctgacg
ccatccgatcatatgctggtgccagacttcccgggcctaccgcaggacggctgtacgatc
actttcgatcgcgatcaggcgctctctcgcgaagatgcacagtttatcagttgggaacac
ccgctgatccgtaacgggctcgatctggtgctgtccggcgataccggcagctgtgcggtg
tcactgctgaaaaataaagcgctgccggtcggcacactgttggcggaactggtttacgtg
gtggaagcgcaggcaccaaaacacctgcaactgacccgcttcctgccacctacgccggtt
cgcctgctgatggatcgtaaaggcaccaatctggcagcacaggttgagtttgagagtttc
aaccgccagctcaacgcggtaaaccgtcatacatccagcaagttggtgaatgcggtacag
gccgatgttcacgccatgttgcaacaggcggaagcgctggtcgaaacgcaggcacgacag
ctcatcaccgaagctcaggagcaggctgacctgcaattgcgccgcgagctggaacgtctg
gaagcgttgaaagccgtcaaccctaacattcgtgaagatgagctgaccgcgctggaaaac
cagcgcgagcaagtgctgagcaacctgcatgaagccaactggcgtctggatgcgatccgt
ctggttgtggtgacacaccagtaa
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