Cutibacterium avidum: PALO_01600
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Entry
PALO_01600 CDS
T02632
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pra
Cutibacterium avidum
Pathway
pra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PALO_01600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pra03021
]
PALO_01600
03400 DNA repair and recombination proteins [BR:
pra03400
]
PALO_01600
Enzymes [BR:
pra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PALO_01600
Transcription machinery [BR:
pra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PALO_01600
DNA repair and recombination proteins [BR:
pra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PALO_01600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AGJ76942
LinkDB
All DBs
Position
345387..349268
Genome browser
AA seq
1293 aa
AA seq
DB search
MLDTNYYDRLQIGLATADQIRAWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSNVRRERMGHIELVAPVTHIWYFKGVPSRLGYLLDI
APKDLEKVIYFAAYMITAVDEEARHRDLPSLEAKVQTERSRMEQRRDSEMEARRVKLEED
MAQLEADGAKADTRRKVKDGAEKELKHIETRAQRQIDRLDAVWDRFKNLKVQDLEGDEIL
YREMKSRFGKYFEGSMGAEAIKRRLHDFDLAAESEKLREIIKTGRGQKKTRALKRLKVVQ
AFLESGNSPEGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLVDL
GAPEIIVNNEKRMLQESVDSLFDNGRRGRPVSGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKMHQCGLPKAMALELFKPFVMKRLADLEHAQNVKSAKRMVERQR
PVVWDVLEEVIKEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCSAFNADFDGDQ
MAVHLPLSPEAQAEARVLMLSTNNILKPADGRPVALPSHEMIIGAYYLTMALDGLKGEGR
AFSSVAEAIMAHDLGELEIGAKIKLRLKGVVPPHGETVRADGSVILDTTLGQALFNEVLP
DDYPYVDYLVGKKQIGKIVNDLSERMTQLEVAHVLDNLKNIGYKWGSLSGVTVSIGDVQT
PPTKPEILAGYEARAAKVDREYDRGAVTEEERRQDLIQIWTEATAELTAAMEANFTQTNP
VHMMVDSGARGSMTQMRQIAAMRGLVADPKGDIIPRPIKSNFREGLTVLEYFISTHGGRK
GQADTALRTADSGYLTRRLVDVSQDVIVREEDCGTTRGMPKTIAVDAGNGNLVRAEGLDT
AVYARCLAADALDANGNVVVAANSDLGDEEISKLIAAGISQIKVRSVLTCTAAQGCCARC
YGRSLSTGHLVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVVELFEA
RSPKGKSPLAEAAGVIRIDESDNRRKLILVRDDGEEDVEYVLPRRARLEFDLDGTHRVIR
DGVRVAAGEQLMGGTADPQDVLRISGVRRVQEYLVKEVQKVYNTQGAGIHEKHIEIVIRQ
MLRRITVIESGDTQMMPGELVDRNSYENANRKAVAEGGRPAEGRPVLMGITKASLATESW
LSAASFQETTKVLTDAAINGKTDTLVGLKENVILGKLIPAGTGLEVYRNMRVEPTAEAKA
AAFTMNYDPFDYDFGSGSGVAVPLDDLDLGDLS
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacaccaactactacgaccggttgcagatcggcctggccacggccgaccagatc
cgtgcgtggagccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgagcgtgacggcctcttctgcgagaagatcttcggcccgacccgtgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgacccgttccaacgtgcgtcgtgagcgcatgggacacatcgagctggtcgcccca
gtgacccacatctggtacttcaagggagttccctcccgcctgggttacctgctcgacatt
gccccgaaggacctcgagaaggtcatctacttcgcggcttacatgatcaccgccgtcgac
gaggaggctcgccaccgcgacctgccgtcgctggaggccaaagtgcagaccgagcgctcc
cgcatggagcagcgtcgtgactccgagatggaggcccgccgggtcaagctcgaggaggac
atggctcagctcgaggccgacggtgccaaggctgacacccgccgcaaggtcaaggacggc
gcggagaaggagctcaagcacatcgagactcgcgcccagcgccagatcgatcgtctcgac
gccgtgtgggatcgcttcaagaacctcaaggtccaggacctcgagggtgacgagatcctc
taccgcgagatgaagtcgcgcttcggtaagtacttcgagggttcgatgggcgccgaggcg
atcaagcgtcgtctccacgacttcgacctcgctgccgagtccgagaagctgcgcgagatc
atcaagaccggccgcggccagaaaaagacccgcgccctcaagcgcctcaaggtcgtgcag
gccttcctcgagtccggcaactcgccggagggcatggtcctggactgcgtcccggtcatc
ccgccggatctgcgcccgatggtgcagctcgacggtggccgcttcgccacctcggacttg
aacgacctctaccgtcgcgtcatcaaccgaaacaaccgcctcaagaggctggttgacctc
ggcgccccggagatcatcgtcaacaacgagaagcgcatgctccaggagtccgtcgactca
ctgttcgacaacggtcgccgtgggcgcccggtgagtggcccgggcaaccgtccgctcaag
tcgctgtccgacatgctcaagggcaagcagggtcgtttccgtcagaacctgctcggtaag
cgagtcgattactccggccgttcggtcatcgtcgtcggcccgcagctcaagatgcaccag
tgtggcctgccgaaggccatggccctggagctgttcaagcccttcgtcatgaagcgtctc
gccgacctcgagcacgcccagaacgtcaagtccgccaagcgcatggtcgaacgccagcgt
cccgtggtgtgggacgtcctcgaggaggtcatcaaggagcacccggttctgctgaaccgt
gcacctaccctgcaccgtctgggtatccaggccttcgagccccagctcatcgagggcaag
gccatccagcttcacccgctcgtctgctcggccttcaacgctgacttcgacggtgaccag
atggccgtgcacctgccgctgagccctgaggcccaggccgaggcccgcgtcctgatgctg
tcgacgaacaacatcctcaaaccggctgacggtcgcccggtcgccctgccctcgcacgag
atgatcatcggcgcttactacctgacgatggccctcgacggcctcaagggtgagggacgt
gctttctcctcggtggccgaggcaatcatggcccatgatcttggcgagctcgagatcggc
gccaagatcaagctgcgtctcaagggcgtcgtgccgccgcacggcgagacggttcgcgct
gacggctccgtcatcctcgacaccaccctgggacaggccctgttcaacgaggtgctgccg
gacgactacccgtacgtcgactacctcgtcggcaagaagcagattggcaagatcgtcaac
gatctcagcgagcggatgacccagctcgaggtggcccacgtcctcgacaacctcaagaac
atcggttacaagtggggttcgctgtccggcgtgaccgtctccatcggcgacgtccagacc
ccgccgaccaagccggagattctggccgggtacgaagctcgcgccgccaaggtcgaccga
gaatacgaccgtggtgccgtgaccgaggaggagcgtcgtcaggacctcatccagatctgg
accgaggccactgccgagttgaccgccgccatggaggccaacttcacccagaccaacccg
gttcacatgatggtcgactcgggcgctcgaggcagtatgacccagatgcgccagatcgcc
gccatgcgcggtctggtggctgacccgaagggtgacatcattcctcgcccgatcaagtcc
aacttccgcgagggcctgacggttctggagtacttcatctccactcacggtggtcgtaag
ggacaggctgacaccgctctgcgtaccgctgactccggttacctgactcgtcgtctggtc
gacgtgtcccaggacgtcatcgtccgcgaggaggactgcggcaccacccgtggcatgccc
aagaccattgctgtcgacgcaggcaacggcaacttggtgcgcgccgaggggctggacacc
gcggtgtacgcccgatgcctggctgccgacgccctcgacgccaatggcaatgtcgtggtg
gcggccaactccgatctcggtgacgaggagatctccaagctcatcgctgctggtatctcg
cagatcaaggtgcgttcggtgctcacctgcactgcagcccagggctgctgcgctcgttgc
tacggacgttcactgtcgaccggtcacctggttgacgtcggtgaggccgtcggcatcatc
gctgctcagtcgattggtgagcctggtacccagctgacgatgcgtaccttccacaccggt
ggtgtcgctggtgacgacatcacccagggtcttccccgtgtcgtcgagctcttcgaggcc
cgtagcccgaagggcaagtcgccgctggccgaggccgctggtgtcatccgcatcgacgag
tccgacaaccgtcgcaagctcatcctggtacgtgacgacggcgaggaggacgtggagtac
gtgctgccgcgccgtgcccgtctcgagttcgacctcgacggcactcaccgtgtcattcgt
gacggagtgcgggttgccgcaggtgagcagctcatgggtggtaccgccgacccgcaggac
gtcctgcgcatctccggtgttcgccgggtgcaggagtacctcgtcaaggaggttcagaag
gtctacaacacccagggcgctggcatccacgagaagcacatcgagatcgtcattcgccag
atgcttcgccgcatcaccgtcatcgagtccggtgacacccagatgatgcccggagagctg
gtggaccgtaactcctacgagaacgccaaccgcaaggctgtcgccgagggcggtcgcccg
gctgagggtcgtccggtgctcatgggcatcacgaaggcctcgctggccaccgagtcctgg
ctgtcggctgcctccttccaggagacgacgaaggtactcaccgatgccgccatcaacggc
aagacggacaccttggtcggtctcaaggagaacgtcatcctcggtaagctcatcccggcc
ggtacgggcctggaggtctaccgcaacatgcgggtggagccgaccgccgaagccaaggct
gctgcgttcacgatgaactacgacccgttcgactacgacttcggttcggggtcgggcgtg
gctgttccgctcgacgatctggatctgggtgatttgagctga
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