Cutibacterium avidum: PALO_05905
Help
Entry
PALO_05905 CDS
T02632
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pra
Cutibacterium avidum
Brite
KEGG Orthology (KO) [BR:
pra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pra03019
]
PALO_05905
Enzymes [BR:
pra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PALO_05905
Messenger RNA biogenesis [BR:
pra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PALO_05905
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
AAA_30
WHD_HA2
AAA_23
nSTAND3
nSTAND_NTPase5
NACHT
T2SSE
ResIII
TsaE
SLFN-g3_helicase
PhoH
Ploopntkinase3
HZS_alpha
Motif
Other DBs
NCBI-ProteinID:
AGJ77789
LinkDB
All DBs
Position
complement(1300255..1304337)
Genome browser
AA seq
1360 aa
AA seq
DB search
MPDSRLEGELPGGGVVAFDTELPIAAHADEIADLIQDHQVVVVAGETGSGKTTQLPKICL
ALGRRRIAHTQPRRIAARSVAERVAEEMGVDLGEQVGYQVRFTRRATSDTALTVMTDGVL
LAEISHDRDLHAHDTIIIDEAHERSLNIDFLLGYLKQLLPRRRDLKVIITSATIDTARFA
AHFDDAPVIEVSGRTYPVEVRYRPLDPSEQVRADDEDEDEELSERPSTPAPVDTKDEVID
QVTGICKAVEELTREGEGDILVFLAGEQEIRETTEALADLRLVNTEILPLFARLSAAEQH
RVFTPHSGRRIVLATNVAETSLTVPGIRYVIDPGTARISRYSVRTKVQRLPIEPVSQASA
NQRAGRCGRVAPGICIRLYSEADFASRPEFTEPEILRTNLAAVILQMAQARLGAITDFPF
VEPPDRSRINDGIRLLDELGALKPGHRDAPRLTKIGHQLARVPLDPRLGRMLLEGSKQGS
LAEVLVIVAALSIRDVRERPAEKREEADSFHRRFATEANLLQTLRAVDDADNNRVGDWSQ
VRQQVHRQPANAPTPGTPARHTPHTNSRPGKPASQPQPGGIDEGGDIMAIHRLWRYLSHQ
RRQMGSSAFRRMCRAEYINYLRVREWGDLHGQLRQIAKELHLEVNRTSAPTDRVLVALLS
GLLSHIGLAQVRESSKRRGQRPGPQEYIGARGTKFAINPGSLLARKSPELVVAVELVETS
RLWARTVAAVQPEWVEEVAGPLIKRSWAAPHWAASTASVVATERAVLFGVPLWADHRVNY
GRVDPVVSRQIFIRSALVERDWRSNHGFLKHNDRVRDEAVDLEERSRQRGLVADDDVIFA
FYDRRVPEGVVSGSHFDAWWRRVQDRHQLDLSLDDLVDSDSVDADAFPDHWKVGNLDLPV
RYVFEPGSGHDGVTVTIPLALLNQVPTAPFSWQVPGLRTELATELIRALPKRIRTQLVPA
PDRARAALTWLEDNGADRQAPFTEELGRALRALTGVIVEADGWNTAAIPAHLRVGFDIVD
AEGRTVGKEPGKKGRNKPTFSQPKHVARSEDLESLQTDLATKVSQSLTKAAGRPQIHGAT
QWTFDPIPERVDLSRKGADAVGYPCLVDEGTAVGSTVLDTPRAQRASHAAGVVRLLVLTL
PDPTKWVVSHMDNGTKLALATSPYPTVPALLADARHKAVASVAHEKAGDLSGIRAKEAFD
DLSLAVRQDQADRMARVVRTAGRILTRLVDARQALAMVSDPAIRADITTQIDDLVFENFI
SATPDPWYDDMPRWIQGVSVRIESLMTNPTRDPRQMAELEPLLVEYDALCEEQPAGKLPA
EIEEIGFMLEELRVQYFAQRLGTRVTVSPKRIRSAMNKVS
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgcctgattcacgactggaaggtgagctgcccggtgggggagtcgtcgccttcgacacc
gagcttcccatcgcggcgcatgccgacgagatcgcagacctcatccaggaccatcaagtc
gtggtggtcgctggtgagacaggttcgggaaagaccacccagcttcccaagatctgcctg
gcactggggcgtcgacgcatcgctcacacccagcctcgccggattgccgcgcgcagcgtc
gccgaacgcgtcgcggaggagatgggggtcgatctgggggaacaggttggctatcaggtg
cgattcactcgtcgcgccacctctgacactgcgctgacggtcatgaccgacggtgtgctg
ctggccgagatctcccatgatcgcgacctgcacgctcacgacaccatcatcatcgacgag
gctcacgagcgtagcctcaacatcgacttcctgctgggctacctcaagcagctactgcca
cggcgtcgcgacctcaaggtcatcatcacctcggccaccatcgacaccgcgaggttcgcg
gcccacttcgacgacgctcccgtcatcgaggtctccggacggacctatcccgtcgaggtg
cggtaccggcccctggacccctcggaacaggtccgcgccgatgacgaggatgaggacgag
gagctctcggagcgcccctcgactcctgccccggtcgatacgaaggacgaggtcatcgac
caggtcaccggtatctgcaaagctgtcgaggaactcacccgggaaggagagggcgacatc
ctcgtcttcctggcgggcgagcaggagatccgggagaccaccgaagccctcgccgacctc
agactggtcaacaccgagattctgccgctgttcgctcggctgtcggccgccgaacagcat
cgggtcttcaccccgcacagcggccggcgcatcgtgctggccacaaacgtcgccgagacc
tccctgacggtgccgggcatccgttacgtcatcgatcctggaaccgctcgtatctcgcgg
tactcggtgcgtaccaaggtgcaacgtcttcctatcgagccggtctcccaggccagcgcg
aatcagcgggccggacgatgcggtcgcgtcgctcccggtatctgcatccgtctctactca
gaggccgacttcgcgtcacgtcccgagttcaccgagcccgagatcctgcgcaccaacctg
gccgccgtcatcctccagatggcccaggctcgactcggtgccatcactgacttccccttc
gtcgagccccccgatcgctcccggatcaatgacggaatccgcctgctcgacgagctggga
gccctcaaacctggccaccgggacgctcccagactgaccaagattggccatcagcttgcc
cgcgtcccgctggatccgcgtctggggcgtatgctgcttgaggggtcgaaacagggcagt
ctcgctgaggtcctcgtcatcgtcgcggcactgtccatccgcgatgtcagggagcgccct
gccgagaagcgggaggaggccgacagcttccaccgacgcttcgccaccgaggcgaacctg
ctgcagaccctccgggccgtcgacgacgccgacaacaaccgggtgggggactggtcccag
gttcgtcagcaggtacaccggcagcccgccaacgccccgacaccggggacaccggcccgt
cacacccctcacaccaattcccgtccgggcaagcctgcctctcagccccagcctggtggg
atcgacgagggcggggacatcatggccatccaccgactgtggcgctacctgagtcatcag
cgtcggcagatgggatcctcggcgttccgtcgtatgtgccgggctgagtacatcaattac
ctgcgcgtgcgcgaatggggcgacctgcacggccaactgcgccagatcgccaaggagctg
cacctggaggtcaaccgcacctccgctcccactgaccgtgttctcgtcgcattgttgtcc
ggcctgctctcccacatcggtctggcccaggttcgggaatcctcgaagcgtcgcggccaa
cgtcctggaccccaggagtacatcggtgctcgcggcaccaagttcgccatcaatcccgga
tccctgctggcgcgcaagtccccggaactcgttgtcgccgtcgaactggtggagacctcc
cggctgtgggcccggacggtggccgccgtccagccggagtgggtggaggaggtcgccgga
ccgctcatcaagcgttcctgggccgctccgcactgggcagcctcgacggcctccgtggtc
gccaccgagcgggcggtcctcttcggggtaccgctgtgggcagatcatcgcgtcaactac
gggcgcgtagacccggtcgtctcccgacagatcttcatccgttccgccctggtggagcgg
gactggcgatccaatcacggtttcctcaaacacaatgaccgggttcgggacgaggcagtc
gacctcgaggaacgtagccgtcagcgcggattggtcgccgacgacgacgtcatcttcgcc
ttctacgaccgtcgtgttccggaaggcgtcgtctcgggatcccatttcgacgcctggtgg
agacgagtccaggatcgtcaccaactcgacctgtcccttgatgacctcgtcgactccgac
tcggtcgacgccgacgccttccctgaccattggaaggttggcaatctcgatcttccggtg
cgttacgtcttcgaacctggatccggccatgacggtgtcaccgtcaccattccgctggcc
ctgctcaatcaggttccgaccgctcctttcagctggcaggttccgggtctgcgcaccgag
ttggccaccgagctcatccgggccctccccaaacggatccggacccaactcgtccccgct
cccgaccgtgcccgagctgcgctgacctggctcgaggacaacggcgctgaccgtcaagcc
cctttcaccgaagaactcgggcgagcattgcgggctctcaccggggtcatcgtggaagcc
gatggctggaacaccgcagccatcccagcgcacctgcgggtcgggttcgacatcgttgac
gccgaggggcgcaccgtcggcaaggagcccgggaagaagggcaggaacaagccgaccttc
tcccagcccaagcacgtcgccaggtccgaggacctggaatcccttcagaccgatctggcc
accaaggtctcgcaatccttgaccaaggccgccggacgaccccagatccatggggcgacg
cagtggaccttcgatccgatcccggaacgggttgacctgtcgcgcaagggggctgacgcc
gtcggctacccctgtctggttgatgagggaactgcggtcggtagcaccgttctcgacact
ccgcgggctcaacgcgccagccacgccgcaggagtcgtcaggctgctcgtcctcaccctg
cccgatccgacgaagtgggtcgtctcgcacatggacaatggcacgaagttggcgttggcg
acctcgccatatcccaccgtgccggcattgttagcagatgcgcgtcacaaggcggttgcc
tcggttgctcatgagaaggcgggggatctgtcggggattcgggcgaaggaggccttcgac
gacctttccctggctgtccgtcaggaccaggccgatcggatggcccgagtggtgcgcacc
gccgggcggatcctcacccgactcgtcgacgcccgtcaggccctggcaatggtttcggat
ccggcaattcgcgccgacatcaccactcagattgatgacctcgtcttcgagaacttcatc
tcggccaccccggatccctggtacgacgacatgccgcgctggatccagggggtgagcgtg
cgcatcgagtccctcatgacgaatccgacgcgcgatccccgccagatggctgagttggag
ccgcttctggtcgagtacgacgccctgtgcgaggaacagccggctggcaagcttcccgcc
gagatcgaggagatcgggttcatgttggaggagcttcgcgtccagtactttgcccagcgc
ctcgggaccagggtcaccgtctccccgaaacggattcgctctgcgatgaacaaggtgtcc
tga
DBGET
integrated database retrieval system
