Cutibacterium avidum: PALO_06455
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Entry
PALO_06455 CDS
T02632
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pra
Cutibacterium avidum
Pathway
pra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PALO_06455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pra03019
]
PALO_06455
03400 DNA repair and recombination proteins [BR:
pra03400
]
PALO_06455
Enzymes [BR:
pra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PALO_06455
Messenger RNA biogenesis [BR:
pra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PALO_06455
DNA repair and recombination proteins [BR:
pra03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PALO_06455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
AGJ77899
LinkDB
All DBs
Position
1422039..1424180
Genome browser
AA seq
713 aa
AA seq
DB search
MSEAPDGDLHSRGLAILRCLVGRDDAEFHPGQWEAVEALVAHRRRALVVQRTGWGKSAVY
FVAALLQRAADFGPTLIVSPLIALMRDQVAATERAGVRAAAISSANVTEWADITSRLDAD
EIDVLLVSPERLVNPKFASEQLPDLVRRLGMLVIDEAHCISDWGHDFRPDYRRIRDLVSA
LPAEIPVLATTATANSRVVQDVAEQIAPGHDRDDVFVLRGPLARTSLRLGVLNLPRPADR
LAWLVQHVGELPGSGIIYCLTISTAEDTARALAEAGHQVQAYTGRTDPEERAVLEEALRN
NQVKALVATSALGMGFDKPDLGFVVHLGAPNSPIAYYQQVGRAGRATENADVLLLPGPED
QGIWTYFATASMPTQERADTTLGALSNGQVLSVPALETRVDIKRSQLDLLLKVMAVDGAV
EKVRGGWRATGKPWIHDTERYERISQARRDEQQAMLTYERLDTCRMAFLTGQLDDPSAAP
CGRCDVCAGPWYPTDIDPAASSSATTTLDRVGVPVEPRMTWPSGMDTLGIGLKGRISADE
TAEEGRVIARLSDLGWGGPLRDLLRNDADGVPIDTEITPALAKACIRVLAEWDWEHRPAA
VVRVASVTRPHLIDSLASGLARAGRLQDLGGLDLAENAPRLDPSRNSAYRLRDVHDRFSV
GPQLMSRLSHLGGAPVLLVDDVISTRWTMTVGARLLRRAGSGPVLPLALALTQ
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagcaccggacggtgacctgcacagccgcggattggcaatcctgcgctgtctc
gtcggtcgcgatgatgccgagttccaccccggccagtgggaggcggtcgaggccttggtg
gcccaccgccgacgtgcactggtggtgcaacgcaccggatggggaaagtcggcggtctac
ttcgtcgctgctctgttgcaacgagctgccgacttcggaccgaccctcatcgtctcccct
ctcatcgccctcatgcgcgaccaagtggctgcaacggagcgcgcaggtgtgcgagccgcc
gcgatctcctcggccaatgtcacggagtgggctgacatcaccagtcgtctcgacgctgac
gagatcgacgttctgctcgtatctccggaacgactcgtcaatccgaagttcgccagtgag
caactgcctgatctggtgaggcgactgggaatgctcgtcatcgacgaagcccactgcatc
tcggactggggccatgatttccgtcctgactaccgacgtatccgggatctcgtctcggca
ctgcctgccgagatcccggtgctggcgacgacggccaccgccaattcgcgagtcgtccag
gacgtcgccgaacagatcgcaccaggccacgaccgtgacgacgtgttcgtgctgcgcggg
ccgttggcccggacgtctctgcgtctcggtgtgctcaacctgcccaggccagccgatcgt
ctggcctggctcgtgcagcacgtgggtgaactgcccggctccgggatcatctactgtctg
acgatctccacggcggaggacaccgctcgagcactggccgaggccggacaccaagtgcag
gcctataccggacgcacggacccggaggaaagggccgtcctcgaggaggctctgcgcaac
aaccaggtgaaagccctcgtcgccaccagtgccctcggcatggggttcgacaaacccgat
ctgggattcgtcgttcatctgggagcaccgaactcccccatcgcctactatcagcaggtc
ggacgggccggccgcgccaccgagaacgctgacgtcctgctgcttccgggtcctgaggac
caggggatatggacctacttcgcaaccgcatccatgcctacccaggaacgtgccgacact
actctgggagcactgtccaacggtcaggtgctgtcggtgccggcgttggagacccgcgtc
gacatcaaacgcagtcagctcgatctgctgctcaaggtgatggcggtcgatggggcggtc
gagaaggttcgtggtggttggcgggcgaccggaaagccgtggatccatgacaccgagcgc
tacgagcggatatcccaggcgcgacgcgatgagcaacaggccatgctcacttacgaacgg
ctggacacctgccggatggccttcctcaccggacagctcgacgacccgtcggcggctccc
tgcggtcgctgcgatgtttgcgccggaccttggtacccgacggacattgacccggcggca
tcgtcctcggcgacgaccaccctggatcgggtcggtgttcccgtcgaaccgcgcatgacc
tggccgtcaggcatggacaccctgggaattggcctcaaaggtcgcatcagcgccgacgag
acggccgaggaaggacgggtcatcgccaggctctctgatctgggctggggcggcccgttg
cgagacctgcttcgtaacgacgccgacggcgtgcccatcgacaccgagatcaccccagca
ttggccaaggcttgcatccgggtgctggccgagtgggattgggagcatcgtccagccgcc
gtggtccgagtggcatccgtcacccgacctcacctcatcgactctctcgcctcggggctc
gcccgcgctggccgcctccaggatcttggcggtctcgatctcgcagagaatgccccacgt
ctcgatccgtcaaggaactcggcttatcgcctccgcgacgtgcatgatcgtttcagcgtc
gggccacaactcatgtcccgcctgtcccacctcggcggcgcccctgttctcctcgtcgac
gacgtcatatccacgcgatggacgatgactgtcggcgcacgcctgttgaggcgagctggg
tctggccctgttctgccgctggcactcgcgctgacccagtga
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