Psychrobacter raelei: MN210_05860
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Entry
MN210_05860 CDS
T10149
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
prae Psychrobacter raelei
Brite
KEGG Orthology (KO) [BR:
prae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
prae03016
]
MN210_05860
Enzymes [BR:
prae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MN210_05860
Transfer RNA biogenesis [BR:
prae03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MN210_05860
Prokaryotic type
tRNA splicing ligases
MN210_05860
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
WXX24650
UniProt:
A0AAU6PW77
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All DBs
Position
1108037..1109251
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AA seq
404 aa
AA seq
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MGIQLILNENSKKGVPVKVYTQDIAQEAIQQLRNMAQLEFVHSHIAVMPDVHVGKGATVG
SVIPTKSAIIPAAVGVDIGCGMNAVRTSLTARDLPDSLRAVRSAIEKQVPVGFNMHNQIT
AKASTLDPLGKRLKPITDKHPGLLKMLKGFERTWAKQLGTLGGGNHFIEICLDENNDVWV
MLHSGSRGIGNCIGRYFINLAKKEHQSRFGHVPDKDLSYFAEGSSSFDDYVEAVQWAQDY
AVQNRKEMMRLVLNAMQSKQAGLPPFTLTKEAINCHHNYVEQETHFGENVYVTRKGAISA
YEGELGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRKMSRTKASKTFTVDELKAQTDGV
ECKKDKSVLDEIPGAYKDIDEVMDNQKDLVEVVHTLKQVLCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgggcatacagctaattttgaatgaaaacagtaaaaagggtgtacccgttaaggtatat
acccaagatatcgcacaagaggcgatacagcaattacgtaatatggcgcagctagaattt
gtgcattcacacattgcagtgatgccagatgtacacgtgggcaaaggcgcaacggtgggc
agcgtgattccgaccaaatccgccattatccctgcagcagtgggtgtcgatatcggctgt
ggtatgaatgcggtgcgtacttcgctaactgccagagacttgccagacagtctaagagcg
gtgcgctcagcgattgagaagcaagtgccggttggctttaatatgcacaatcaaatcaca
gccaaagcctcaacccttgatccgttaggtaaacgcttaaagccaattaccgataagcac
ccggggttgcttaaaatgctcaagggttttgagcggacttgggccaaacagctgggtaca
cttggcggtggtaaccactttatcgagatttgtcttgatgaaaacaacgatgtgtgggtg
atgctgcactcaggtagccgaggtattggtaactgtatcggccgctattttattaatttg
gccaaaaaagagcatcaatcacgctttggtcatgtgcctgacaaagatttgtcttatttt
gctgaaggttcaagcagctttgatgactatgtcgaagcggtgcagtgggcgcaggattat
gcggtacaaaaccgtaaagagatgatgcgcttggtgttaaatgcgatgcagtcgaagcag
gcaggattaccgccctttaccctgaccaaagaagccattaactgtcaccacaactatgtg
gagcaagagacgcattttggcgaaaacgtctatgtcactcgcaaaggcgctatcagtgct
tacgagggtgagctgggtattattccaggctctatgggtgctaagtcgtttattgtgcgt
ggtcttggtaatgaagagtcgttttgctcatgctcacatggggcagggcgtaagatgagt
cgaaccaaagcgtctaaaaccttcaccgttgatgagcttaaagcgcaaactgacggcgtt
gaatgcaaaaaagacaaaagcgtactcgatgaaataccgggtgcttacaaagacatcgat
gaggtaatggacaatcaaaaagatttggttgaagtggtgcatacgctaaagcaggtactt
tgtgtgaagggatag
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